View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15559_high_4 (Length: 325)

Name: NF15559_high_4
Description: NF15559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15559_high_4
NF15559_high_4
[»] chr8 (13 HSPs)
chr8 (22-168)||(38613611-38613757)
chr8 (165-294)||(6311097-6311229)
chr8 (167-294)||(7290080-7290211)
chr8 (168-292)||(36979184-36979308)
chr8 (168-292)||(4760242-4760366)
chr8 (168-292)||(30655448-30655572)
chr8 (189-294)||(39784977-39785086)
chr8 (168-273)||(18853356-18853457)
chr8 (168-286)||(18870734-18870849)
chr8 (189-271)||(25328456-25328540)
chr8 (159-292)||(10689309-10689442)
chr8 (204-292)||(33037972-33038063)
chr8 (189-271)||(35745213-35745298)
[»] chr5 (19 HSPs)
chr5 (167-294)||(1457315-1457446)
chr5 (168-294)||(27444771-27444901)
chr5 (168-294)||(43592080-43592210)
chr5 (168-294)||(43598525-43598655)
chr5 (168-294)||(43604017-43604147)
chr5 (168-294)||(43609509-43609639)
chr5 (168-294)||(27449615-27449745)
chr5 (185-294)||(30631227-30631338)
chr5 (189-294)||(28807729-28807837)
chr5 (189-294)||(15044512-15044618)
chr5 (168-225)||(31180079-31180134)
chr5 (168-292)||(38191983-38192105)
chr5 (168-292)||(38219208-38219330)
chr5 (189-271)||(37556802-37556887)
chr5 (189-271)||(37561624-37561709)
chr5 (168-224)||(35387474-35387527)
chr5 (189-271)||(2785197-2785282)
chr5 (189-271)||(31397171-31397256)
chr5 (189-271)||(31402028-31402113)
[»] chr4 (11 HSPs)
chr4 (167-294)||(51520257-51520388)
chr4 (189-294)||(9224560-9224668)
chr4 (189-294)||(9229347-9229455)
chr4 (167-294)||(56146865-56146996)
chr4 (189-293)||(3813846-3813954)
chr4 (189-294)||(18855549-18855657)
chr4 (189-292)||(45347973-45348079)
chr4 (189-292)||(45357452-45357558)
chr4 (168-292)||(24741748-24741871)
chr4 (189-294)||(5732486-5732593)
chr4 (168-292)||(29760449-29760572)
[»] scaffold0135 (1 HSPs)
scaffold0135 (189-294)||(35215-35323)
[»] chr7 (14 HSPs)
chr7 (189-294)||(12396735-12396843)
chr7 (189-294)||(12406155-12406263)
chr7 (189-271)||(24024506-24024589)
chr7 (189-294)||(4866553-4866661)
chr7 (189-294)||(31109737-31109844)
chr7 (166-271)||(2057763-2057866)
chr7 (168-292)||(20357713-20357837)
chr7 (189-294)||(19992135-19992243)
chr7 (189-294)||(21812393-21812501)
chr7 (168-292)||(1533608-1533730)
chr7 (168-242)||(2479148-2479221)
chr7 (164-242)||(47263485-47263562)
chr7 (168-224)||(21645818-21645871)
chr7 (189-242)||(21983113-21983164)
[»] chr6 (11 HSPs)
chr6 (189-294)||(11856795-11856903)
chr6 (189-294)||(14737730-14737838)
chr6 (189-294)||(14742589-14742697)
chr6 (189-294)||(22010850-22010958)
chr6 (189-294)||(6438324-6438431)
chr6 (189-294)||(28184325-28184436)
chr6 (189-271)||(28155749-28155832)
chr6 (168-292)||(5674934-5675057)
chr6 (168-292)||(30125960-30126084)
chr6 (189-271)||(6005239-6005324)
chr6 (168-242)||(5757691-5757764)
[»] chr3 (14 HSPs)
chr3 (189-294)||(22173348-22173456)
chr3 (166-292)||(7167049-7167174)
chr3 (189-294)||(18656256-18656363)
chr3 (168-292)||(2671752-2671876)
chr3 (168-270)||(40372986-40373085)
chr3 (167-292)||(8477170-8477295)
chr3 (168-294)||(28504020-28504145)
chr3 (168-271)||(8739254-8739354)
chr3 (168-271)||(9091492-9091592)
chr3 (189-271)||(8512037-8512122)
chr3 (189-271)||(8516917-8517002)
chr3 (189-271)||(2677266-2677351)
chr3 (189-271)||(2673110-2673195)
chr3 (189-271)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (189-294)||(44312777-44312885)
chr2 (166-292)||(11099093-11099219)
chr2 (189-294)||(32246607-32246716)
chr2 (189-294)||(39812141-39812250)
chr2 (168-292)||(14291295-14291419)
chr2 (168-292)||(9296567-9296691)
chr2 (189-271)||(19344243-19344327)
chr2 (189-271)||(19349101-19349185)
chr2 (168-292)||(25403443-25403565)
chr2 (168-292)||(25398305-25398427)
[»] scaffold0464 (1 HSPs)
scaffold0464 (189-294)||(185-293)
[»] chr1 (10 HSPs)
chr1 (189-294)||(25445244-25445352)
chr1 (189-294)||(39445322-39445430)
chr1 (189-294)||(44024027-44024135)
chr1 (189-266)||(41386571-41386650)
chr1 (189-271)||(41398060-41398144)
chr1 (189-294)||(1055166-1055274)
chr1 (207-271)||(43988644-43988709)
chr1 (168-224)||(19359079-19359132)
chr1 (168-224)||(24203001-24203054)
chr1 (204-264)||(24787564-24787624)
[»] scaffold0127 (1 HSPs)
scaffold0127 (189-266)||(34132-34211)
[»] scaffold0355 (2 HSPs)
scaffold0355 (189-271)||(9818-9902)
scaffold0355 (189-294)||(40-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (167-290)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (189-249)||(13171-13233)
[»] scaffold0087 (1 HSPs)
scaffold0087 (168-242)||(44174-44247)
[»] scaffold0188 (1 HSPs)
scaffold0188 (168-224)||(24278-24331)
[»] scaffold1805 (1 HSPs)
scaffold1805 (189-242)||(1238-1290)
[»] scaffold0197 (1 HSPs)
scaffold0197 (189-271)||(19343-19428)
[»] scaffold0028 (1 HSPs)
scaffold0028 (189-271)||(149134-149219)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  22 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 121  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  122 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 168  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 6311097 - 6311229
Alignment:
Q  165 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca 263  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  264 aacaaca--aaaccagccctagactagtgtata 294  Q
    |||||||  ||| ||||||||||||||||||||    
T  6311197 aacaacaacaaagcagccctagactagtgtata 6311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 7290211 - 7290080
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  265 acaaca--aaaccagccctagactagtgtata 294  Q
    ||||||  ||| ||||||||||||||||||||    
T  7290111 acaacaacaaagcagccctagactagtgtata 7290080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 36979184 - 36979308
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||  |    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 36979280  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  36979281 acaacaaaaacagccctagactagtgta 36979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 4760366 - 4760242
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| ||||||||||||||||| |||||||  |||||| |||||||||||| || ||| ||||||||||||||| | ||||||||||||||||  |    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaa--aaacaaagatgtgtggagctagagatagtggtaatcaatgagca-aaatggtttccaagcaaca 4760270  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  4760269 acaacaaaaacagccctagactagtgta 4760242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 30655448 - 30655572
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||  |    
T  30655448 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 30655543  T
Q  265 acaac-aaaaccagccctagactagtgta 292  Q
    ||||| |||| ||||||||||||||||||    
T  30655544 acaacaaaaaacagccctagactagtgta 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 39785086 - 39784977
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 284  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| || ||||  ||| ||||||||      
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaacaaaacagccctaag 39784987  T
Q  285 ctagtgtata 294  Q
    ||||||||||    
T  39784986 ctagtgtata 39784977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 18853457 - 18853356
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    |||||||| ||||||||||||||||||||| |||| |||    ||||||||||||||| ||| ||||||||| |||||  ||||||||||||||||||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacgaaacaaa----gatgtgtggagcaagagatagtggtaatctatgagt-caaatggtttccaagcaaac 18853363  T
Q  267 aacaaaa 273  Q
    |||||||    
T  18853362 aacaaaa 18853356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 18870849 - 18870734
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||  |||||||| |||||   |||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  267 aacaaaaccagccctagact 286  Q
    |||||||   ||||||||||    
T  18870753 aacaaaaaacgccctagact 18870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 25328540 - 25328456
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    ||||| |||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 25328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 10689442 - 10689309
Alignment:
Q  159 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttc 257  Q
    ||||| || ||||||| || |||||||||||||||||||||||  |||||| ||||||||||||||| ||| ||||||||| |||||  | |||||||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  258 caagca--aacaacaaaaccagccctagactagtgta 292  Q
    ||||||  |||||||||| || ||||||  |||||||    
T  10689345 caagcaacaacaacaaaaacaaccctagtgtagtgta 10689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 33038063 - 33037972
Alignment:
Q  204 aaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa--acaacaa-aaccagccctagactagtgta 292  Q
    |||||| ||||||||||||||| ||| ||||||||||||||  | |||||||||||||||||  ||||||| || ||||||||||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatgaaca-aaatggtttccaagcaacaacaacaataaacagccctagactagtgta 33037972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 35745213 - 35745298
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| |||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 35745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 1457446 - 1457315
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  265 acaaca--aaaccagccctagactagtgtata 294  Q
    ||||||  ||| ||||||||||||||||||||    
T  1457346 acaacaacaaagcagccctagactagtgtata 1457315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 27444771 - 27444901
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaa 265  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  266 caaca--aaaccagccctagactagtgtata 294  Q
    |||||  | | ||||||||||||||||||||    
T  27444871 caacaacatagcagccctagactagtgtata 27444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 43592080 - 43592210
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaa 265  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  266 caaca--aaaccagccctagactagtgtata 294  Q
    |||||  ||| ||||||||||||||||||||    
T  43592180 caacaacaaagcagccctagactagtgtata 43592210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 43598525 - 43598655
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaa 265  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  266 caaca--aaaccagccctagactagtgtata 294  Q
    |||||  ||| ||||||||||||||||||||    
T  43598625 caacaacaaagcagccctagactagtgtata 43598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 43604017 - 43604147
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaa 265  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  266 caaca--aaaccagccctagactagtgtata 294  Q
    |||||  ||| ||||||||||||||||||||    
T  43604117 caacaacaaagcagccctagactagtgtata 43604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 43609509 - 43609639
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaa 265  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  266 caaca--aaaccagccctagactagtgtata 294  Q
    |||||  ||| ||||||||||||||||||||    
T  43609609 caacaacaaagcagccctagactagtgtata 43609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 294
Target Start/End: Original strand, 27449615 - 27449745
Alignment:
Q  168 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaa 265  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  266 caaca--aaaccagccctagactagtgtata 294  Q
    |||||  | | ||||||||||||||||||||    
T  27449715 caacaacatagcagccctagactagtgtata 27449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 30631227 - 30631338
Alignment:
Q  185 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--aacaacaaaaccagccct 281  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||  |||||||||| |||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaagcaacaacaacaaaa-cagccct 30631325  T
Q  282 agactagtgtata 294  Q
    |||||||||||||    
T  30631326 agactagtgtata 30631338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 28807837 - 28807729
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 28807738  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  28807737 tagtgtata 28807729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 15044512 - 15044618
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||  |||||| |||| ||||||||||| ||||||||||||||||||||||||| ||||| | |||||||  ||| |||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagccctagac 15044609  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  15044610 tagtgtata 15044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 31180079 - 31180134
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaag 225  Q
    |||||||| |||||||||||||||||||||||||   |||||||||||||||||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaag 31180134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 38191983 - 38192105
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagc-aagtgatgtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| |||||||||||||||||||||||   ||||||| |||||||||||| ||  || ||||||||| ||| |   |||  || ||||||||  |    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38192077  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  38192078 acaacaaaaacagccctagactagtgta 38192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 38219208 - 38219330
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagc-aagtgatgtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| |||||||||||||||||||||||   ||||||| |||||||||||| ||  || ||||||||| ||| |   |||  || ||||||||  |    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38219302  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  38219303 acaacaaaaacagccctagactagtgta 38219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 37556887 - 37556802
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| || ||||||||||||||||||| ||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 37561709 - 37561624
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| || ||||||||||||||||||| ||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37561624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 2785197 - 2785282
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| |||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 2785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 31397256 - 31397171
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 31402113 - 31402028
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 51520257 - 51520388
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  265 acaaca--aaaccagccctagactagtgtata 294  Q
    ||||||  ||| ||||||||||||||||||||    
T  51520357 acaacaacaaagcagccctagactagtgtata 51520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 9224668 - 9224560
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9224569  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  9224568 tagtgtata 9224560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 9229455 - 9229347
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9229356  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  9229355 tagtgtata 9229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 294
Target Start/End: Complemental strand, 56146996 - 56146865
Alignment:
Q  167 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||| |||||||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  265 acaaca--aaaccagccctagactagtgtata 294  Q
    ||||||  ||| ||||||||||||||||||||    
T  56146896 acaacaacaaagcagccctagactagtgtata 56146865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 3813846 - 3813954
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 284  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||  ||| ||| ||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtcctaga 3813945  T
Q  285 ctagtgtat 293  Q
    |||||||||    
T  3813946 ctagtgtat 3813954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 18855549 - 18855657
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 18855648  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  18855649 tagtgtata 18855657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 45348079 - 45347973
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45347980  T
Q  286 tagtgta 292  Q
    |||||||    
T  45347979 tagtgta 45347973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 45357558 - 45357452
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45357459  T
Q  286 tagtgta 292  Q
    |||||||    
T  45357458 tagtgta 45357452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 24741748 - 24741871
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||  |    
T  24741748 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 24741843  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  24741844 acaacaaaaacagccctagactagtgta 24741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 5732486 - 5732593
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatg-tggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||  ||| ||||||||  |    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 5732584  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  5732585 tagtgtata 5732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 29760449 - 29760572
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||| |||||||||||| | |  ||||||||||||||||  |    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaagcaaca 29760545  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| || |||||||||||||||    
T  29760546 acaacaaaa-caaccctagactagtgta 29760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 35323 - 35215
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 35224  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  35223 tagtgtata 35215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 12396735 - 12396843
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12396834  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  12396835 tagtgtata 12396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 12406155 - 12406263
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12406254  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  12406255 tagtgtata 12406263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 24024589 - 24024506
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 24024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 4866553 - 4866661
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||  ||| ||| |||||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtcctagac 4866652  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  4866653 tagtgtata 4866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 31109844 - 31109737
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||  ||| |||||||| ||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta-ac 31109746  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  31109745 tagtgtata 31109737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 271
Target Start/End: Original strand, 2057763 - 2057866
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||| ||||||||| |||||  ||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  265 acaacaa 271  Q
    |||||||    
T  2057860 acaacaa 2057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 20357837 - 20357713
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagc---a 263  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||| ||||||||| |||||  |||||||| |||||||        
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  264 aacaacaaaaccagccctagactagtgta 292  Q
    |||||||||| ||||||||||||||||||    
T  20357741 aacaacaaaaacagccctagactagtgta 20357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 19992135 - 19992243
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| || ||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||  ||||||| || ||||||||  |    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaacaaacagccctaagc 19992234  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  19992235 tagtgtata 19992243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 21812501 - 21812393
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||||| ||||||| |||||||| |||||||| || ||||||||  |    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaacaaacagccctaagc 21812402  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  21812401 tagtgtata 21812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 1533730 - 1533608
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||   || ||||||||||||||||| |||  |||||||||||  |    
T  1533730 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaatatagtggtaatcaatgagaaaaaa--gtttccaagcaaca 1533636  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    |||||||||||||||| || ||||||||    
T  1533635 acaacaaaaccagccccagtctagtgta 1533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 2479148 - 2479221
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatgtggtaatcaatg 242  Q
    |||||||| |||||||||| | ||||||||||||||  ||||| ||||||||||||||  || |||||||||||||    
T  2479148 tgttgtgagttccggttgataatcacaccaatgaaa--aacaaagatgtgtggagcaaaggaagtggtaatcaatg 2479221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 47263485 - 47263562
Alignment:
Q  164 cttctgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatgtggtaatcaatg 242  Q
    |||||||||||| |||||||||| | |||||||||||||  |||||| |||| |||||||||  || |||||||||||||    
T  47263485 cttctgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgcgtggagcaaaggaagtggtaatcaatg 47263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 21645818 - 21645871
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 21645871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 21983113 - 21983164
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatgtggtaatcaatg 242  Q
    ||||||||||||||  ||||||||||| |||||||| ||| |||||||||||||    
T  21983113 tcacaccaatgaaa--aacaatgatgtatggagcaaatgaagtggtaatcaatg 21983164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 11856795 - 11856903
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 11856894  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  11856895 tagtgtata 11856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 14737838 - 14737730
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 14737739  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  14737738 tagtgtata 14737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 14742697 - 14742589
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||  ||| |||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaacagccctagac 14742598  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  14742597 tagtgtata 14742589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 22010958 - 22010850
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  ||| | |||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 22010859  T
Q  286 tagtgtata 294  Q
     ||||||||    
T  22010858 aagtgtata 22010850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 6438324 - 6438431
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagact 286  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||  ||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaacaaacagccctaagct 6438423  T
Q  287 agtgtata 294  Q
    ||||||||    
T  6438424 agtgtata 6438431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 28184325 - 28184436
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaac--aaatggtttccaagcaaacaaca--aaaccagcccta 282  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||  ||||||| |||||||||||||||  ||| ||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T
Q  283 gactagtgtata 294  Q
    ||||||||||||    
T  28184425 gactagtgtata 28184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 28155832 - 28155749
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| | ||||| ||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaa 28155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 5675057 - 5674934
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  ||| ||||||||||| ||| | ||| | || |||||||  |    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaaagagta-aaaagtttcccaagcaaca 5674962  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||||||||||||| ||||||||    
T  5674961 acaacaaaaccagccctagtctagtgta 5674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 30126084 - 30125960
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa-- 264  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | | ||| ||||| |||||  |||||||| ||||||| |      
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  265 -acaacaaaaccagccctagactagtgta 292  Q
     ||||||||| ||||||||||||||||||    
T  30125988 tacaacaaaaacagccctagactagtgta 30125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 6005239 - 6005324
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| |||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 6005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 5757764 - 5757691
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatgtggtaatcaatg 242  Q
    |||||||| |||||||||| | ||||||||||||||  ||||| || |||||||||||  || |||||||||||||    
T  5757764 tgttgtgagttccggttgataatcacaccaatgaaa--aacaaagaagtgtggagcaaaggaagtggtaatcaatg 5757691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 22173456 - 22173348
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 22173357  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  22173356 tagtgtata 22173348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 7167049 - 7167174
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca- 263  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||| ||||||||| ||||| | ||||||||||||||||     
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgagca-aaatggtttccaagcaa 7167145  T
Q  264 -aacaacaaaaccagccctagactagtgta 292  Q
     |||||||||| ||||||||||||||||||    
T  7167146 caacaacaaaa-cagccctagactagtgta 7167174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 18656256 - 18656363
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatg-tggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||  ||| ||||||||  |    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 18656354  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  18656355 tagtgtata 18656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 2671876 - 2671752
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--- 263  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||| ||| ||||||||| |||||  |||||||| ||||||||       
T  2671876 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  264 aacaacaaaaccagccctagactagtgta 292  Q
    |||||||||| ||||||||| ||||||||    
T  2671780 aacaacaaaaacagccctagtctagtgta 2671752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 40373085 - 40372986
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||| ||||||||||||| | | |||||||||||||||||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 40372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 292
Target Start/End: Original strand, 8477170 - 8477295
Alignment:
Q  167 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  ||| ||||||||||| ||| | ||| | || ||||||||    
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaaagagtaaaaa-gtttcccaagcaa 8477265  T
Q  265 --acaacaaaaccagccctagactagtgta 292  Q
      ||||||||||||||||||||||||||||    
T  8477266 caacaacaaaaccagccctagactagtgta 8477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 28504145 - 28504020
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | | ||| ||||| ||||||| ||||||||||||||||  |    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgagaa-aaatggtttccaagcaaca 28504049  T
Q  265 acaacaaaaccagccctagactagtgtata 294  Q
    ||||||||| ||||||| ||||||||||||    
T  28504048 acaacaaaa-cagcccttgactagtgtata 28504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 8739354 - 8739254
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    |||||||| | ||||||| ||||||||||||||   |||||| |||||||||||||||  || ||||||||| |||||  |||||||||||||||||||     
T  8739354 tgttgtgaattcggttgagactcacaccaatga---aaacaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  267 aacaa 271  Q
    |||||    
T  8739258 aacaa 8739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 9091592 - 9091492
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    |||||||| | ||||||| ||||||||||||||   |||||| |||||||||||||||  || ||||||||| |||||  |||||||||||||||||||     
T  9091592 tgttgtgaattcggttgagactcacaccaatga---aaacaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  267 aacaa 271  Q
    |||||    
T  9091496 aacaa 9091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 8512037 - 8512122
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | | ||||| |||||| ||||||| |||||||| ||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8512122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 8516917 - 8517002
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | | ||||| |||||| ||||||| |||||||| ||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 2677351 - 2677266
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| |||||||||||||||||||||| | | ||||| |||||| |||||||  ||||||| ||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaa 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 2673195 - 2673110
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| |||||||||||||||||||||| | | ||||| ||||||  ||||||  ||||||| ||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaa 2673110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 10207755 - 10207840
Alignment:
Q  189 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| ||||||| |||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 10207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 44312885 - 44312777
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  ||| | |||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 44312786  T
Q  286 tagtgtata 294  Q
     ||||||||    
T  44312785 aagtgtata 44312777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 11099219 - 11099093
Alignment:
Q  166 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca- 263  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||     
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaa 11099123  T
Q  264 -aacaacaaaaccagccctagactagtgta 292  Q
     |||||||||| ||||||||||||||||||    
T  11099122 caacaacaaaaacagccctagactagtgta 11099093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 32246607 - 32246716
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 284  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||  ||| ||| ||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtcctaga 32246706  T
Q  285 ctagtgtata 294  Q
    ||||||||||    
T  32246707 ctagtgtata 32246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 39812250 - 39812141
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 284  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||  ||| ||||||||      
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagccctaag 39812151  T
Q  285 ctagtgtata 294  Q
    ||||||||||    
T  39812150 ctagtgtata 39812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 14291295 - 14291419
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--- 263  Q
    |||||||| ||||||| ||||||||||||||||   |||||| | ||||||||||||| ||| ||||||||||||| | | ||||||||||||||||       
T  14291295 tgttgtgaatccggttaaaactcacaccaatga---aaacaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 14291390  T
Q  264 aacaacaaaaccagccctagactagtgta 292  Q
    |||||||||| ||||||||||||| ||||    
T  14291391 aacaacaaaaacagccctagactaatgta 14291419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 9296691 - 9296567
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca--- 263  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | | ||||||||| ||||| | ||||||||||||||||       
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgagca-aaatggtttccaagcaaac 9296596  T
Q  264 aacaacaaaaccagccctagactagtgta 292  Q
    |||||||||| ||||||||| ||||||||    
T  9296595 aacaacaaaaacagccctagtctagtgta 9296567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 19344243 - 19344327
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||||| |||||||  ||||||| ||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 19349101 - 19349185
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| ||||||||| |||||| |||||||  ||||||| ||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19349185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 25403443 - 25403565
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagc-aagtgatgtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| |||||||||||||||||||||||   ||||||| |||||||||||| ||  || ||||||||| ||| |   |||  || ||||||||  |    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25403537  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  25403538 acaacaaaaacagccctagactagtgta 25403565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 25398305 - 25398427
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagc-aagtgatgtggtaatcaatgagaacaaatggtttccaagca--a 264  Q
    |||||||| || ||||||||||||||||||||   ||||||| |||||||||||| ||  || ||||||||| ||| |   |||  || ||||||||  |    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25398399  T
Q  265 acaacaaaaccagccctagactagtgta 292  Q
    ||||||||| ||||||||||||||||||    
T  25398400 acaacaaaaacagccctagactagtgta 25398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 185 - 293
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatg-tggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 284  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  285 tagtgtata 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 25445352 - 25445244
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 25445253  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  25445252 tagtgtata 25445244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 39445322 - 39445430
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||  |    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaacaaacagccctaagc 39445421  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  39445422 tagtgtata 39445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 44024135 - 44024027
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 44024036  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  44024035 tagtgtata 44024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 41386571 - 41386650
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 41386650  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 41398060 - 41398144
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    ||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaa 41398144  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 1055274 - 1055166
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 285  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||  ||||||||  ||||||| || ||||||||  |    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaacaaacagccctaagc 1055175  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  1055174 tagtgtata 1055166  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 43988709 - 43988644
Alignment:
Q  207 caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    ||||||||||||||||||||||| | | ||||| |||||| ||||||| |||||||| ||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 43988644  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 24203054 - 24203001
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaa 24203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 24787624 - 24787564
Alignment:
Q  204 aaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaa 264  Q
    |||||| ||||||||||||||| ||| |||||||| |||||| | |||||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgagca-aaatggtttccaagcaa 24787564  T

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Target: scaffold0127 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 34211 - 34132
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaac 266  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 34132  T

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Target: scaffold0355 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 9902 - 9818
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||| ||||| ||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaa 9818  T

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Target: scaffold0355; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 143 - 40
Alignment:
Q  189 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatgtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 285  Q
    |||||||||| |||||||| ||||||||||||||||||||||     ||||||||||| |||||||| |||||| ||||||||  ||| ||||||||  |    
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtgat-----aatcaatgagagcaaatggtctccaagtaaacaacaacaaaacagccctaagc 49  T
Q  286 tagtgtata 294  Q
    |||||||||    
T  48 tagtgtata 40  T

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Target: scaffold0978 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 290
Target Start/End: Complemental strand, 528 - 404
Alignment:
Q  167 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagca-- 263  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||| ||||||||| ||||| | ||||||||||||||||      
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaagcaac 432  T
Q  264 aacaac-aaaaccagccctagactagtg 290  Q
    |||||| |||| |||||||| |||||||    
T  431 aacaacaaaaaacagccctaaactagtg 404  T

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Target: scaffold0479 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 13171 - 13233
Alignment:
Q  189 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaa 249  Q
    |||||||||||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

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Target: scaffold0087 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 44247 - 44174
Alignment:
Q  168 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatgtggtaatcaatg 242  Q
    |||||||| |||||||||| | ||||||||||||||  ||||| ||||||||||||||  || |||||||||||||    
T  44247 tgttgtgagttccggttgataatcacaccaatgaaa--aacaaagatgtgtggagcaaaggaagtggtaatcaatg 44174  T

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Target: scaffold0188 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 24331 - 24278
Alignment:
Q  168 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 224  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 24278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 1238 - 1290
Alignment:
Q  189 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatgtggtaatcaatg 242  Q
    |||||||||||||| |||||| ||||||||||||||  || |||||||||||||    
T  1238 tcacaccaatgaaa-aaacaaagatgtgtggagcaaaggaagtggtaatcaatg 1290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 19428 - 19343
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 19343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 149219 - 149134
Alignment:
Q  189 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgat-gtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 271  Q
    |||||||||||| |||||| ||||||||||||||||||||||| | | ||||| |||||  |||||||  ||||||| ||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 149134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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