View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1555_low_1 (Length: 578)

Name: NF1555_low_1
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1555_low_1
NF1555_low_1
[»] scaffold0287 (4 HSPs)
scaffold0287 (259-377)||(16566-16683)
scaffold0287 (21-115)||(15847-15941)
scaffold0287 (438-566)||(16745-16873)
scaffold0287 (108-202)||(16416-16509)
[»] chr7 (5 HSPs)
chr7 (259-377)||(3629402-3629519)
chr7 (21-115)||(3630144-3630238)
chr7 (438-566)||(3629212-3629340)
chr7 (21-116)||(3619767-3619862)
chr7 (108-202)||(3629576-3629669)
[»] chr5 (4 HSPs)
chr5 (30-68)||(9400285-9400323)
chr5 (29-109)||(31039430-31039510)
chr5 (29-109)||(31052920-31053000)
chr5 (27-115)||(31071746-31071834)
[»] chr3 (1 HSPs)
chr3 (154-202)||(11284189-11284237)
[»] chr2 (1 HSPs)
chr2 (154-202)||(12141745-12141793)


Alignment Details
Target: scaffold0287 (Bit Score: 103; Significance: 6e-51; HSPs: 4)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 259 - 377
Target Start/End: Original strand, 16566 - 16683
Alignment:
Q  259 cctatagcgacctaattactcttcatttattttacttttgttagtacataatctacacgcctaaaccccctaagtctaatttccatcctccttttttatt 358  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16566 cctatagtgacctaactactcttcatttattttacttttgttagtacataatctacacgcctaaa-cccctaagtctaatttccatcctccttttttatt 16664  T
Q  359 gcacaatcatacaaaagac 377  Q
    |||||||||||||||||||    
T  16665 gcacaatcatacaaaagac 16683  T

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Target: scaffold0287; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 15847 - 15941
Alignment:
Q  21 cccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  15847 cccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgataccatt 15941  T

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Target: scaffold0287; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 438 - 566
Target Start/End: Original strand, 16745 - 16873
Alignment:
Q  438 attgaattcatgagtgaacccgaatacgattcttggatgaaataatatttgatagtcagactatatttacctcctaccgaacttcaggtaaccatagttc 537  Q
    |||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||| ||||     
T  16745 attggattcatgagtgaacccaagtacgattcttgggtgaaacaatatttgatagtcagactatacttacctcctaccaaactccagataaccagagttt 16844  T
Q  538 cctttcctgtaacacatcacatgcctttg 566  Q
    |||| || |||||||||||||||||||||    
T  16845 ccttccccgtaacacatcacatgcctttg 16873  T

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Target: scaffold0287; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 16416 - 16509
Alignment:
Q  108 ataccattcaaagtaaatcaaagaagcnnnnnnngcaaatctttgaggttggctacatcaatcaaaagatgcaataatgctctatcatataccat 202  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16416 ataccattcaaagtaaatcaaagaagcaaaaaatt-aaatctttgaggttggctacatcgatcaaaagatgcaataatgctctatcatataccat 16509  T

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Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 3629519 - 3629402
Alignment:
Q  259 cctatagcgacctaattactcttcatttattttacttttgttagtacataatctacacgcctaaaccccctaagtctaatttccatcctccttttttatt 358  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3629519 cctatagtgacctaactactcttcatttattttacttttgttagtacataatctacacgcctaaa-cccctaagtctaatttccatcctccttttttatt 3629421  T
Q  359 gcacaatcatacaaaagac 377  Q
    |||||||||||||||||||    
T  3629420 gcacaatcatacaaaagac 3629402  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 3630238 - 3630144
Alignment:
Q  21 cccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  3630238 cccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaatgatatagattttaaaggacgggattttgagttgataccatt 3630144  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 438 - 566
Target Start/End: Complemental strand, 3629340 - 3629212
Alignment:
Q  438 attgaattcatgagtgaacccgaatacgattcttggatgaaataatatttgatagtcagactatatttacctcctaccgaacttcaggtaaccatagttc 537  Q
    |||| |||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||| ||| |||||| ||||     
T  3629340 attggattcatgagtgaacccaagtacgattcttgggtgaaacaatatttgatagtcagactatacttacctcctaccaaactccagataaccagagttt 3629241  T
Q  538 cctttcctgtaacacatcacatgcctttg 566  Q
    |||| || |||||||||||||||||||||    
T  3629240 ccttccccgtaacacatcacatgcctttg 3629212  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 3619862 - 3619767
Alignment:
Q  21 cccgaggcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccattc 116  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||| || ||||||    
T  3619862 cccgagacatggaaagaccccgatgagttttatccagagagattcttaaacaatgatatagattttaagggacaaaatttcgagtttattccattc 3619767  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 3629669 - 3629576
Alignment:
Q  108 ataccattcaaagtaaatcaaagaagcnnnnnnngcaaatctttgaggttggctacatcaatcaaaagatgcaataatgctctatcatataccat 202  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3629669 ataccattcaaagtaaatcaaagaagcaaaaaatt-aaatctttgaggttggctacatcgatcaaaagatgcaataatgctctatcatataccat 3629576  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 9400323 - 9400285
Alignment:
Q  30 tggaaagatcccgacgagttttatccagagagattctta 68  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  9400323 tggaaagatccagaagagttttatccagagagattctta 9400285  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 31039510 - 31039430
Alignment:
Q  29 atggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgat 109  Q
    |||||| ||||| || ||||||||||||||||||||| ||   |  ||||||||||| || |||| |||||||||| ||||    
T  31039510 atggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgat 31039430  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 31053000 - 31052920
Alignment:
Q  29 atggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgat 109  Q
    |||||| ||||| || ||||||||||||||||||||| ||   |  ||||||||||| || |||| |||||||||| ||||    
T  31053000 atggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgat 31052920  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 31071834 - 31071746
Alignment:
Q  27 gcatggaaagatcccgacgagttttatccagagagattcttaaacaacgatatagattttaagggacgagattttgagttgataccatt 115  Q
    |||||||| ||||| || ||||||||||||||||||||| ||   |  ||||||||||| || |||| |||||| ||| |||| |||||    
T  31071834 gcatggaaggatccagaagagttttatccagagagattcataggtagtgatatagatttaaaaggacaagatttcgagctgattccatt 31071746  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 11284237 - 11284189
Alignment:
Q  154 ggttggctacatcaatcaaaagatgcaataatgctctatcatataccat 202  Q
    ||||||||||||  |||||| |||||||||||| || ||||||||||||    
T  11284237 ggttggctacatggatcaaacgatgcaataatgttcaatcatataccat 11284189  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 12141793 - 12141745
Alignment:
Q  154 ggttggctacatcaatcaaaagatgcaataatgctctatcatataccat 202  Q
    ||||||||||||| ||||||  |||| |||||| |||||||||||||||    
T  12141793 ggttggctacatcgatcaaatcatgccataatgttctatcatataccat 12141745  T

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