View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1555_low_10 (Length: 212)

Name: NF1555_low_10
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1555_low_10
NF1555_low_10
[»] chr7 (2 HSPs)
chr7 (6-197)||(12823319-12823510)
chr7 (122-192)||(12823011-12823081)
[»] chr2 (5 HSPs)
chr2 (52-181)||(24932055-24932184)
chr2 (52-181)||(25681544-25681673)
chr2 (107-180)||(35130526-35130599)
chr2 (110-181)||(35654176-35654247)
chr2 (122-186)||(35678291-35678355)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 12823510 - 12823319
Alignment:
Q  6 catcatcaaattcttcacgacatgtgaagtccacaaaaatgtcttcaaaatgaatgtaacaagttctgccttgattgcaatgataatatctaatgtagat 105  Q
    |||||||| ||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  12823510 catcatcacattcttcacaacatgcgaagtccaccaaaatgtcttcgaaatgaatgtaacaagttctgccttgattgcactgataatgtcttatgtagat 12823411  T
Q  106 gttacataaaatcggatcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatatgatatctcaattatat 197  Q
    ||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  12823410 gttgcataaaatcaggtcacaaaaatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatttatatgatatctcaatgatat 12823319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 12823011 - 12823081
Alignment:
Q  122 tcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatatgatatctcaat 192  Q
    ||||| ||||||||||||||||||| | ||||||||||  ||||| ||  |||||||| |||||| |||||    
T  12823011 tcacatagatcatcgagtaatccaaatcggtgttgtttgatttgacaggaagatctatgtgatatgtcaat 12823081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 24932184 - 24932055
Alignment:
Q  52 aaaatgaatgtaacaagttctgccttgattgcaatgataatatctaatgtagatgttacataaaatcggatcacaaagatcatcgagtaatccaagtagg 151  Q
    ||||||| || |||||||||||||| ||||||||||| |||   | |||| ||| || ||||||||    |||||||||||| |||||||||||||||||    
T  24932184 aaaatgagtgcaacaagttctgcctcgattgcaatgacaatccattatgtggatcttgcataaaatattgtcacaaagatcaccgagtaatccaagtagg 24932085  T
Q  152 tgttgtttagtttgatagctagatctatat 181  Q
    ||||||||| ||| |||| |||||||||||    
T  24932084 tgttgtttaattttatagttagatctatat 24932055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 25681673 - 25681544
Alignment:
Q  52 aaaatgaatgtaacaagttctgccttgattgcaatgataatatctaatgtagatgttacataaaatcggatcacaaagatcatcgagtaatccaagtagg 151  Q
    ||||||| || |||||||||||||| ||||||||||| |||   | |||| ||| || ||||||||    |||||||||||| |||||||||||||||||    
T  25681673 aaaatgagtgcaacaagttctgcctcgattgcaatgacaatccattatgtggatcttgcataaaatattgtcacaaagatcaccgagtaatccaagtagg 25681574  T
Q  152 tgttgtttagtttgatagctagatctatat 181  Q
    || |||||| ||| |||| |||||||||||    
T  25681573 tgctgtttaattttatagttagatctatat 25681544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 35130599 - 35130526
Alignment:
Q  107 ttacataaaatcggatcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctata 180  Q
    ||||||||||||  |||||||||||||||||||||||| |||  ||||||||||   |||||| ||||||||||    
T  35130599 ttacataaaatctcatcacaaagatcatcgagtaatcctagtgagtgttgtttaaagtgataggtagatctata 35130526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 35654247 - 35654176
Alignment:
Q  110 cataaaatcggatcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatat 181  Q
    |||||||||  ||||||||||||||||||||||||||||  ||||| ||||    |||||||||||||||||    
T  35654247 cataaaatctcatcacaaagatcatcgagtaatccaagtgagtgttctttaaagggatagctagatctatat 35654176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 35678355 - 35678291
Alignment:
Q  122 tcacaaagatcatcgagtaatccaagtaggtgttgtttagtttgatagctagatctatatgatat 186  Q
    |||||||||||||| ||||||||||||  ||| |||||| ||||||  |||||||| ||| ||||    
T  35678355 tcacaaagatcatctagtaatccaagtgagtgctgtttaatttgattactagatctgtataatat 35678291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University