View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1555_low_2 (Length: 514)
Name: NF1555_low_2
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1555_low_2 |
 | |
|
| [»] scaffold0543 (2 HSPs) |
| | |
|
| [»] scaffold0492 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0543 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 285 - 509
Target Start/End: Complemental strand, 3255 - 3031
Alignment:
| Q |
285 |
gcaaatcagtagttcaaacttataaaatactgttagttttttacaaatgggagtaatacactttgtagtggtataagatagctagcttgtggcttgctct |
384 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3255 |
gcaaatcagtcgttcaaacttataaaatactgttagttttttacaaatgggagtaatacactttgtagtggtataagatagctagcttgtggcttgctct |
3156 |
T |
|
| Q |
385 |
aaaatggatcaaggaagaagttggctatatctttttaaagaggtctaggaagaagtttcgacagttatgtattttacattattttaggaatatctactag |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3155 |
aaaatggatcaaggaagaagttggctatatctttttacagaggtctaggaagaagtttcgacagttatgtattttacattattttaggaatatctactag |
3056 |
T |
|
| Q |
485 |
gtgtaggctttagtagaataatcta |
509 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3055 |
gtgtaggctttagtagaataatcta |
3031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 3525 - 3299
Alignment:
| Q |
15 |
tcacttagaacatgtcactttcggatattttgaatatatcaccaaacttctatcaggctgtcccattctaaacgaattggaaacgaaggatttattcata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3525 |
tcacttagaacatgtcactttcggatattttgaatatatcaccaaacttctatcaggctgtcccattctaaacgaattggaaacgaaggatttattcata |
3426 |
T |
|
| Q |
115 |
gagcaatattctagggttctaagagtagtggttctaagccttcccaatttggtaagagctaatatttctgatgatcttatttggtacgattggcttcata |
214 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3425 |
gagcaatattctagggttctaagggtggtggttctaagccttcccaatttggtaagagctaatatttctgatgatcttattcggtacgattggcttcata |
3326 |
T |
|
| Q |
215 |
tggcgcagcatctgcgcatacgacagg |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3325 |
tggcgcagcatctgcgcatacgacagg |
3299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 285 - 509
Target Start/End: Complemental strand, 4801 - 4577
Alignment:
| Q |
285 |
gcaaatcagtagttcaaacttataaaatactgttagttttttacaaatgggagtaatacactttgtagtggtataagatagctagcttgtggcttgctct |
384 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4801 |
gcaaatcagtcgttcaaacttataaaatactgttagttttttacaaatgggagtaatacactttgtagtggtataagatagctagcttgtggcttgctct |
4702 |
T |
|
| Q |
385 |
aaaatggatcaaggaagaagttggctatatctttttaaagaggtctaggaagaagtttcgacagttatgtattttacattattttaggaatatctactag |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4701 |
aaaatggatcaaggaagaagttggctatatctttttacagaggtctaggaagaagtttcgacagttatgtattttacattattttaggaatatctactag |
4602 |
T |
|
| Q |
485 |
gtgtaggctttagtagaataatcta |
509 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4601 |
gtgtaggctttagtagaataatcta |
4577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 5071 - 4845
Alignment:
| Q |
15 |
tcacttagaacatgtcactttcggatattttgaatatatcaccaaacttctatcaggctgtcccattctaaacgaattggaaacgaaggatttattcata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5071 |
tcacttagaacatgtcactttcggatattttgaatatatcaccaaacttctatcaggctgtcccattctaaacgaattggaaacgaaggatttattcata |
4972 |
T |
|
| Q |
115 |
gagcaatattctagggttctaagagtagtggttctaagccttcccaatttggtaagagctaatatttctgatgatcttatttggtacgattggcttcata |
214 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4971 |
gagcaatattctagggttctaagggtggtggttctaagccttcccaatttggtaagagctaatatttctgatgatcttattcggtacgattggcttcata |
4872 |
T |
|
| Q |
215 |
tggcgcagcatctgcgcatacgacagg |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4871 |
tggcgcagcatctgcgcatacgacagg |
4845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 509
Target Start/End: Complemental strand, 8989552 - 8989496
Alignment:
| Q |
453 |
gtattttacattattttaggaatatctactaggtgtaggctttagtagaataatcta |
509 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8989552 |
gtattttaaattattctagaaatatctactaggtgtaggctttagtagaataatcta |
8989496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 21513118 - 21513177
Alignment:
| Q |
334 |
ggagtaatacactttgtagtggtataagatagctagcttgtggcttgctctaaaatggat |
393 |
Q |
| |
|
|||||| |||||||||||||| || |||||| |||||||||| |||||||||||||||| |
|
|
| T |
21513118 |
ggagtagtacactttgtagtgttagaagataattagcttgtggtttgctctaaaatggat |
21513177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University