View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1555_low_3 (Length: 374)
Name: NF1555_low_3
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1555_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 8534261 - 8534608
Alignment:
| Q |
11 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
110 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8534261 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8534360 |
T |
|
| Q |
111 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534361 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8534460 |
T |
|
| Q |
211 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534461 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
8534560 |
T |
|
| Q |
311 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8534561 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
8534608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 8599500 - 8599847
Alignment:
| Q |
11 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8599500 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagcatagcaaccaatatcgggggcacaagaggtaagaa |
8599599 |
T |
|
| Q |
111 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8599600 |
ggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8599699 |
T |
|
| Q |
211 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8599700 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
8599799 |
T |
|
| Q |
311 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8599800 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
8599847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 8613926 - 8613579
Alignment:
| Q |
11 |
cagagaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaa |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
8613926 |
cagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttcagtatagcaaccaatatcgggggcacaagaggtaagaa |
8613827 |
T |
|
| Q |
111 |
ggttgctctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8613826 |
ggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaac |
8613727 |
T |
|
| Q |
211 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8613726 |
accgcaagaccgtatatatgaaacatcggaacagtacatatgaaagtttctcttgtctcttgttctttaccgaacctagccattacaacttgaaccatcg |
8613627 |
T |
|
| Q |
311 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8613626 |
ctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
8613579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 14751921 - 14752154
Alignment:
| Q |
18 |
caccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgctcagcatagcaaccaatatcgggggcacaagaggtaagaaggttgct |
117 |
Q |
| |
|
|||||||||||| |||||||| || || ||||||||||| ||||| || ||| | |||||||| || ||||| || |||||||| |||| ||| || || |
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|
| T |
14751921 |
caccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgact |
14752020 |
T |
|
| Q |
118 |
ctgaatttttcaatggatgaaagcatgtcgtgcatctcgaatttagagagaacaactatggttgaacccatagcaagaagccccatagcaaacaccgcaa |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||| || |||||||| | || |||||||| ||| |||| || | |
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| T |
14752021 |
ttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaacgattgttgaacctaaagagagaagccc---agcgaacattgcta |
14752117 |
T |
|
| Q |
218 |
gaccgtatatatgaaacatcggaacagtacatatgaa |
254 |
Q |
| |
|
|||||||||| |||||||| |||| || |||||||| |
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|
| T |
14752118 |
gaccgtatatgtgaaacatgggaattgtgcatatgaa |
14752154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 14752197 - 14752261
Alignment:
| Q |
294 |
tacaacttgaaccatcgctattagattcttgtgggaagatactactcctttgcttggtcctgttg |
358 |
Q |
| |
|
||||| ||||||||| ||||| || || | || ||||||||||||||||||||||||||||||| |
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| T |
14752197 |
tacaatttgaaccattgctatgaggtttctatgtgaagatactactcctttgcttggtcctgttg |
14752261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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