View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1555_low_4 (Length: 340)
Name: NF1555_low_4
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1555_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 26239488 - 26239250
Alignment:
| Q |
18 |
agagtgtttgcatgaatctcctagaagaagaaaactgctaatctagggttagaggttccgcgtcgtcaccacctcatttggattatgtttgctaatgagg |
117 |
Q |
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| T |
26239488 |
agagtgtttgcatgaatctcctaaaagaagaaaactgttaatctagggttagaggttccgcgtcgtcaccacctcatttggattatgtttgctaatgagg |
26239389 |
T |
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| Q |
118 |
ctcgggtgcttatatctccgactatataaaagctgcaattctgttttcctatcagtaaaagatcaaggtttacgatttattacttttatttaaaaatata |
217 |
Q |
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| T |
26239388 |
ctcgggtgcttatatctccgactatataaaagctgcaattctgttttcctatcagtaaaagatcaaggtttacgatttattacttttatttaaaaatata |
26239289 |
T |
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| Q |
218 |
acaacccatttgccaacgtcaacaataacacaacattta |
256 |
Q |
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| T |
26239288 |
acaacccatttgccaacgtcaacaataacacaatattta |
26239250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 26239191 - 26239105
Alignment:
| Q |
254 |
ttactcatacacaagaataagaaatgtataaaactataaagatgaaatagttttaaattaaaattgtttcctaaggccacgatttat |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26239191 |
ttactcatacacaagaataagaaatgtataaaactataaagatgaaatagttttaaattaaaattgttttctaaggccacgatttat |
26239105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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