View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1555_low_5 (Length: 316)

Name: NF1555_low_5
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1555_low_5
NF1555_low_5
[»] chr2 (8 HSPs)
chr2 (19-307)||(17666312-17666600)
chr2 (19-307)||(17716316-17716604)
chr2 (19-305)||(17717579-17717865)
chr2 (22-307)||(17703672-17703957)
chr2 (19-307)||(17647658-17647946)
chr2 (19-300)||(17621581-17621862)
chr2 (135-281)||(17719755-17719907)
chr2 (135-225)||(17720139-17720235)
[»] chr7 (4 HSPs)
chr7 (20-307)||(39985904-39986191)
chr7 (123-307)||(8017036-8017220)
chr7 (20-307)||(8102925-8103212)
chr7 (158-295)||(8667815-8667952)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 17666600 - 17666312
Alignment:
Q  19 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 118  Q
    ||||| ||||||||||| |||||||| || |||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||| ||| |||||    
T  17666600 tgcaggagtgggctcattgataattcccaggacattaagaccagaaataagaccggcatccttagtagcttgtctgtgattaaaattaaaataagcaggg 17666501  T
Q  119 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17666500 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgcggaaaatt 17666401  T
Q  219 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17666400 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatatcactc 17666312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 17716604 - 17716316
Alignment:
Q  19 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 118  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||||  ||| ||||  |||||||||||| |||||  ||||||||||||| |||||    
T  17716604 tgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaaaattaaagtaagcaggg 17716505  T
Q  119 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 218  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  17716504 acagtaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgcggcaaatt 17716405  T
Q  219 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
    ||||| ||| |||  ||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||    
T  17716404 gcttaactttaccactgtagttaacaccaatcattggcttttcatccgggccagaaattatcttaaaaggccacaacttcatatcactc 17716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 17717865 - 17717579
Alignment:
Q  19 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 118  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||| |||| ||||||| |||||| |||||||||||  |  |||||||||| |||||    
T  17717865 tgcagcagtgggctcatcgataatttccatgacattaagaccagcaaaaagagcggcatccttagtaacttgtatctgagaatcattaaagtaagcaggg 17717766  T
Q  119 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 218  Q
    | | |||||||||||||| |||||| ||| |||| ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||| | |||||    
T  17717765 acagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctcacgcatcttccagagtaccatggaagagatctcttctgcagcaaatt 17717666  T
Q  219 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcac 305  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||  | |||||||||| |||||||| |||||||||||||| ||||    
T  17717665 gcttatcttcaccattgtagtttacaccaatcattggcttttcacccaggccagaaattatcttaaaaggccacaacttcatatcac 17717579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 17703957 - 17703672
Alignment:
Q  22 agcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacagggata 121  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||||| | | ||||| |||||||||||| |||||  |  ||||||||||||||||| |    
T  17703957 agcagtgggctcatcgataattcccatgacattaagttcagcaataacagcagcatccttagtagcttgtctctgagaattattaaagtaaacagggaca 17703858  T
Q  122 ctaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattgct 221  Q
     ||||||| |||||| |||||| |||||||| |||||||||||||| || ||| ||||||  ||||| ||||||||||||||||||||| | ||||||||    
T  17703857 gtaacaacagcattcctaatgggagagccaaagtaggcctcagcaatctgacgaatcttccagagtaacatggaagagatctcttctgcagtaaattgct 17703758  T
Q  222 tatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
    |||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  17703757 tatcttcaccattgtagttaacaccaatcattggcttatcatccgggccagaaataatcttaaaaggccacaacttcatatcactc 17703672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 17647946 - 17647658
Alignment:
Q  19 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 118  Q
    ||||||| ||||||| | |||||||| | ||||||||| |||||||| || || |||| |   ||| ||||||||||||| |  |||||||||| |||||    
T  17647946 tgcagcaatgggctccttgataattcccctgacattaataccagcaaaaacacaggcaaccacagtggcttgtatctgataattattaaagtaagcaggg 17647847  T
Q  119 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 218  Q
    | | ||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||| | |||||    
T  17647846 aaagtaacaacagcatccttaatggcagagccaaggtaggcctcagcaacctctcgaatcttcatgagtaccatggcagagatctcttctgcggcaaatt 17647747  T
Q  219 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||| | |||||||||| |||||||| |||||||||||||| ||||||    
T  17647746 gcttatcttcaccattgtagttaacaacaatcattggcttttcatccaggccagaaattatcttaaaaggccacaacttcatatcactc 17647658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 17621862 - 17621581
Alignment:
Q  19 tgcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggg 118  Q
    ||||||||||||||||| ||||||   |||||||||||||||||||| || | | ||||| ||||||  |||| |||||  |  ||||||||||||||||    
T  17621862 tgcagcagtgggctcatcgataatatccatgacattaagaccagcaaaaacagctgcatccttagtaatttgtctctgagaatcattaaagtaaacaggg 17621763  T
Q  119 atactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaatt 218  Q
    | | ||||||| |||||| ||||||||||||||| |||||||||||||| |||||||||||||  ||||| |||||| |||||||||||||  | |||||    
T  17621762 acagtaacaacagcattcctaatggcagagccaacgtaggcctcagcaatctcacgcatcttccagagtatcatggatgagatctcttctggggcaaatt 17621663  T
Q  219 gcttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcat 300  Q
    |||||||||||||   || ||||||||||||||  |||||||||| |||||||||||| |||||||| ||||||||||||||    
T  17621662 gcttatcttcaccaaagttgttaacaccaatcaatggcttttcatccgggccagaaatcatcttaaaaggccacaacttcat 17621581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 17719907 - 17719755
Alignment:
Q  135 tcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtacca------tggaagagatctcttctgccgaaaattgcttatcttc 228  Q
    |||| ||||||||||||||||| |||||| ||| || |||||||||| |||||||||      ||||| | ||||||||||| |  ||||||||||| |     
T  17719907 tcttcatggcagagccaaggtaagcctcaacaatcttacgcatcttcatgagtaccactaccatggaatatatctcttctgcggttaattgcttatcatt 17719808  T
Q  229 acccttgtagttaacaccaatcataggcttttcatacgggccagaaataatct 281  Q
    |||||||||||||||||||||||| |||||||||  ||| |||||||| ||||    
T  17719807 acccttgtagttaacaccaatcattggcttttcagccggtccagaaattatct 17719755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 17720235 - 17720139
Alignment:
Q  135 tcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgag------taccatggaagagatctcttctgccgaaaattgcttatc 225  Q
    |||| ||||||||||||||||| |||||||||| || |||||||||| ||||      |||||||||| | ||||||||||| | ||||||||||||    
T  17720235 tcttcatggcagagccaaggtaagcctcagcaatcttacgcatcttcatgagtaccactaccatggaatatatctcttctgcggtaaattgcttatc 17720139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 39985904 - 39986191
Alignment:
Q  20 gcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggga 119  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||  || ||||| || ||||||||   |||      |||||||||| ||||||    
T  39985904 gcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcaggga 39986003  T
Q  120 tactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattg 219  Q
     | ||||||| ||||||||||||||||| |||||||| || || |||| ||||||||||||| | || |||||||||||||||||||| || | |||||     
T  39986004 cagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcacgcatcttcattagcaccatggaagagatctcttcggcagcaaattc 39986103  T
Q  220 cttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
    |||||||||||| ||||||||||||||||| |  |||||||||   || ||||||||||||||||| |||||||||||||| ||||||    
T  39986104 cttatcttcacctttgtagttaacaccaataagtggcttttcagctggcccagaaataatcttaaaaggccacaacttcatgtcactc 39986191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 307
Target Start/End: Complemental strand, 8017220 - 8017036
Alignment:
Q  123 taacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattgctt 222  Q
    |||||||||||||||| |  |  || || ||||| || ||||||| ||||||||||||  |||||||||| || || || || || || | |||||||||    
T  8017220 taacaacggcattcttcacagttgaaccgaggtaagcttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgctt 8017121  T
Q  223 atcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
     || |||||||||||||||||||||||||| |||||||||   || |||| ||||| |||||| |||||||||||||| ||||||    
T  8017120 gtcctcacccttgtagttaacaccaatcattggcttttcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactc 8017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 8102925 - 8103212
Alignment:
Q  20 gcagcagtgggctcatagataattctcatgacattaagaccagcaataagaccggcatcattagtagcttgtatctgattaaaattaaagtaaacaggga 119  Q
    |||||||| |||||||  ||||||||||  ||||| | |||||| |||| ||| ||||| ||||| |||||   ||||  |  ||| |||||| ||||||    
T  8102925 gcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcaggga 8103024  T
Q  120 tactaacaacggcattcttaatggcagagccaaggtaggcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattg 219  Q
     | | || ||||||||||||||||     ||||| || || || |||| ||||||||||||  | |  |||||||| ||||| || || | || |||  |    
T  8103025 cagtgacgacggcattcttaatggtgacaccaagataagcttcggcaatctcacgcatcttaatcaaaaccatggatgagatttcctcagacgcaaacag 8103124  T
Q  220 cttatcttcacccttgtagttaacaccaatcataggcttttcatacgggccagaaataatcttaaatggccacaacttcatctcactc 307  Q
     || || |||||||||||||||||||||||||| |||||||||   || || | ||||| |||||| |||||||||||||| ||||||    
T  8103125 tttttcctcacccttgtagttaacaccaatcattggcttttcaccaggacccgcaataaccttaaaaggccacaacttcatgtcactc 8103212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 8667815 - 8667952
Alignment:
Q  158 gcctcagcaacctcacgcatcttcgtgagtaccatggaagagatctcttctgccgaaaattgcttatcttcacccttgtagttaacaccaatcataggct 257  Q
    ||||| |||||||| |||||||| || || ||||| ||||| || || || ||  |||| ||||| |||| ||||||||| ||||||  ||||||||| |    
T  8667815 gcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtt 8667914  T
Q  258 tttcatacgggccagaaataatcttaaatggccacaac 295  Q
    | ||||     |||||||||| ||| ||||||||||||    
T  8667915 tgtcattaacaccagaaataaccttgaatggccacaac 8667952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University