View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1555_low_8 (Length: 250)
Name: NF1555_low_8
Description: NF1555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1555_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 26238906 - 26239142
Alignment:
| Q |
11 |
cataggtgtttatttatttaatttttgtccgtagataagatgataaatatcaattaaaaatcacatacacttgtaaaattttgagtttaaactatgatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26238906 |
cataggtgtttatttatttaatttttgtccgtagataagatgataaatatcaattaaaaatcacatacacttgtaaaattttgagtttaaactatgatga |
26239005 |
T |
|
| Q |
111 |
aaatgttcaacttaataataatatttgcattccttacaaaaatttgatatatgtattgttagttgagtggaagtttacattacacaaaaaactataggag |
210 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26239006 |
aaatgatcaacttaat---aatatttgcattccttacaaaaatttgatatatgtattgttagttgagtggaagtttacattacacaaaaaactataggag |
26239102 |
T |
|
| Q |
211 |
aaataaatcgtggccttagaaaacaattttaatttaaaac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26239103 |
aaataaatcgtggccttagaaaacaattttaatttaaaac |
26239142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University