View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556-INSERTION-2 (Length: 968)

Name: NF1556-INSERTION-2
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556-INSERTION-2
NF1556-INSERTION-2
[»] scaffold0076 (2 HSPs)
scaffold0076 (220-711)||(47228-47732)
scaffold0076 (8-218)||(47790-47996)
[»] chr6 (6 HSPs)
chr6 (752-919)||(24495180-24495347)
chr6 (753-919)||(24491623-24491789)
chr6 (800-919)||(2810226-2810345)
chr6 (8-162)||(4281541-4281689)
chr6 (751-792)||(2810030-2810071)
chr6 (916-966)||(24494125-24494177)
[»] chr3 (3 HSPs)
chr3 (748-919)||(24358931-24359102)
chr3 (8-96)||(17594762-17594850)
chr3 (80-162)||(19807200-19807279)
[»] chr8 (6 HSPs)
chr8 (8-218)||(20133874-20134076)
chr8 (220-355)||(20134134-20134270)
chr8 (8-162)||(14674569-14674717)
chr8 (8-162)||(31710199-31710347)
chr8 (618-711)||(20134271-20134362)
chr8 (80-162)||(18974406-18974485)
[»] chr7 (4 HSPs)
chr7 (8-218)||(44357995-44358197)
chr7 (220-355)||(44357801-44357937)
chr7 (618-711)||(44357709-44357800)
chr7 (80-153)||(5331387-5331457)
[»] chr4 (3 HSPs)
chr4 (220-430)||(12325334-12325551)
chr4 (8-181)||(12325720-12325890)
chr4 (716-752)||(20854061-20854097)
[»] chr5 (3 HSPs)
chr5 (752-919)||(18556646-18556812)
chr5 (8-163)||(11203439-11203588)
chr5 (620-697)||(11203324-11203402)
[»] scaffold0003 (3 HSPs)
scaffold0003 (768-919)||(86693-86848)
scaffold0003 (752-784)||(86645-86677)
scaffold0003 (916-966)||(93475-93527)
[»] chr2 (1 HSPs)
chr2 (8-162)||(8165833-8165978)


Alignment Details
Target: scaffold0076 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 220 - 711
Target Start/End: Complemental strand, 47732 - 47228
Alignment:
Q  220 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgt-ggcgaagtttgg 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  47732 aaaggtaccacctgacacgatatcatgacttctgtgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcgg 47633  T
Q  319 aatattgccttagcttcttctgcatatgtgtgcatgctgtctatgtaagttgttagttatcattcatattaccaaaa---------tatagtatgtggac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||         ||||||||||||||    
T  47632 aatattgccttagcttcttctgcatatgtgtgcatgctgtctatgtaagttgttagttatcatccatattatcaaaaaatattatctatagtatgtggac 47533  T
Q  410 acccaaaaattgttcattaaaccacggaaactttattcattcaatgataattggaaaagagcatgaaatccaaccnnnnnnnnnnnncacttatatttta 509  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||            |||||| ||||||    
T  47532 acccaaaaattgttcattaacccaccgaaactttattcattcaatgataattggaaaagagcatgaaatccaaccaaaaaagaaaaacacttagatttta 47433  T
Q  510 accacaaaatcagatcgaattaagccataattgtaatggtaaaaggatttcaataattctattccactagaatatcatgggttaatgtttcaaaggctga 609  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47432 accacaaaatcagatcgaattaggccataattgtaatggtaaaatgatttcaataattctattccactagaatatcatgggttaatgtttcaaaggctga 47333  T
Q  610 cacttacacctatcaaagtattatgtgctag----tatgcaccaacaaaaaagagcaaacatatagatatcaatttaagaaggtaaagaggtgtaacttc 705  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  47332 cacttacacctatcaaagtattatgtgctagtatatatgcaccaacaaaaaagagcaaa-acacagatatcaatttaagaaggtaaagaggtgtaacttc 47234  T
Q  706 acatag 711  Q
    ||||||    
T  47233 acatag 47228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 47996 - 47790
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47996 ataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgtagtagtagta 47897  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatataacgcataaaacgataaacaaaaagta 207  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  47896 ---atagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatatatcgcat-aaacgacgaacaaaaagta 47801  T
Q  208 ttgtaatagca 218  Q
    |||||||||||    
T  47800 ttgtaatagca 47790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 9e-85; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 752 - 919
Target Start/End: Original strand, 24495180 - 24495347
Alignment:
Q  752 gtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacac 851  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24495180 gtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacac 24495279  T
Q  852 tgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttct 919  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24495280 tgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttct 24495347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 753 - 919
Target Start/End: Original strand, 24491623 - 24491789
Alignment:
Q  753 tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacact 852  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24491623 tgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacact 24491722  T
Q  853 gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttct 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24491723 gtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttct 24491789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 800 - 919
Target Start/End: Original strand, 2810226 - 2810345
Alignment:
Q  800 tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt 899  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2810226 tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt 2810325  T
Q  900 aggacagcaaatatgtttct 919  Q
    |||||| |||||||||||||    
T  2810326 aggacaacaaatatgtttct 2810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 4281541 - 4281689
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||| ||||| || |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||      ||||||    
T  4281541 ataaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgct------gtagta 4281634  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca 162  Q
     ||||  ||||| ||||||| |||||| |||||||||||| |||||  |||||||    
T  4281635 ttaatgaaatcagggatgaaggtccaacctattgtctccaaaatatccattatca 4281689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 751 - 792
Target Start/End: Original strand, 2810030 - 2810071
Alignment:
Q  751 agtgttaaggttacaggaccaaggcttttaaattaagagata 792  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  2810030 agtgttaaggttacaagaccaaggcttttaaattaagagata 2810071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 916 - 966
Target Start/End: Original strand, 24494125 - 24494177
Alignment:
Q  916 ttctttcttactctc-tatgggtttgtcaattc-aaatctgatccatcattat 966  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  24494125 ttctttcttactctcctatgggtttgtcaattccaaatctgatccatcattat 24494177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 9e-85; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 748 - 919
Target Start/End: Original strand, 24358931 - 24359102
Alignment:
Q  748 attagtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatc 847  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24358931 attattgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatc 24359030  T
Q  848 acactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttct 919  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24359031 acactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaatatgtttct 24359102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 17594850 - 17594762
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctg 96  Q
    |||||| || ||||| || |||||||||| ||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||||    
T  17594850 ataaccaggctgatggagatgagaaattgagttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttgctg 17594762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 19807200 - 19807279
Alignment:
Q  80 gtacaatacccttgctgtagtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca 162  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||||||| |||||||||||| |||||  |||||||    
T  19807200 gtacaatacccgtgctgtag---tagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca 19807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 3e-78; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 20133874 - 20134076
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  20133874 ataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagta 20133973  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatataacgcataaaacgataaacaaaaagta 207  Q
    |||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  20133974 gtaatagaatcaaggatgaaagtccaa-------tctctagaatattaattatcactctatcacagtgcatatatcgcat-aaacgacgaacaaaaagta 20134065  T
Q  208 ttgtaatagca 218  Q
    |||||||||||    
T  20134066 ttgtaatagca 20134076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 220 - 355
Target Start/End: Original strand, 20134134 - 20134270
Alignment:
Q  220 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtg-tggcgaagtttgg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  20134134 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcgg 20134233  T
Q  319 aatattgccttagcttcttctgcatatgtgtgcatgc 355  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  20134234 aatattgccttggcttcttccgcatatgtgtgcatgc 20134270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 14674717 - 14674569
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||      ||||    
T  14674717 ataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgt------agta 14674624  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca 162  Q
     ||||  ||||| ||||||| |||||| |||||||||||| ||||| ||||||||    
T  14674623 ttaatgaaatcagggatgaatgtccaacctattgtctccaaaatatcaattatca 14674569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 31710347 - 31710199
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||| | ||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||      ||||    
T  31710347 ataaccgagctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgt------agta 31710254  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca 162  Q
     ||||  ||||| ||||||| |||||| |||||||||||| ||||| ||||||||    
T  31710253 ttaatgaaatcagggatgaaggtccaacctattgtctccaaaatatcaattatca 31710199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 618 - 711
Target Start/End: Original strand, 20134271 - 20134362
Alignment:
Q  618 cctatcaaagtattatgtgctagtatgcaccaacaaaaaagagcaaacatatagatatcaatttaagaaggtaaagaggtgtaacttcacatag 711  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  20134271 cctatcaaagtattatgtgctagtatgcaacaacaaaaaa-agcaaa-acacagatatcaatttaagaaggtaaagaggtgtaacttcacatag 20134362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 18974485 - 18974406
Alignment:
Q  80 gtacaatacccttgctgtagtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca 162  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||||||||||| |||||||||||| |||||  |||||||    
T  18974485 gtacaatacccgtgctgtagtagtagta---atagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca 18974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 3e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 44358197 - 44357995
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  44358197 ataaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagta 44358098  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatataacgcataaaacgataaacaaaaagta 207  Q
    |||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||    
T  44358097 gtaatagaatcaaggatgaaagtccaa-------tctctagaatattaattatcactctatcacagtgcatatatcgcat-aaacgacgaacaaaaagta 44358006  T
Q  208 ttgtaatagca 218  Q
    |||||||||||    
T  44358005 ttgtaatagca 44357995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 44357937 - 44357801
Alignment:
Q  220 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtg-tggcgaagtttgg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  44357937 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttcgg 44357838  T
Q  319 aatattgccttagcttcttctgcatatgtgtgcatgc 355  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  44357837 aatattgccttggcttcttccgcatatgtgtgcatgc 44357801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 618 - 711
Target Start/End: Complemental strand, 44357800 - 44357709
Alignment:
Q  618 cctatcaaagtattatgtgctagtatgcaccaacaaaaaagagcaaacatatagatatcaatttaagaaggtaaagaggtgtaacttcacatag 711  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||    
T  44357800 cctatcaaagtattatgtgctagtatgcaacaacaaaaaa-agcaaa-acacagatatcaatttaagaaggtaaagaggtgtaacttcacatag 44357709  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 5331387 - 5331457
Alignment:
Q  80 gtacaatacccttgctgtagtagtagtagtaatagaatcaaggatgaaagtccaatctattgtctccagaatat 153  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  5331387 gtacaatacccgtgctgtag---tagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatat 5331457  T

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Target: chr4 (Bit Score: 149; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 220 - 430
Target Start/End: Complemental strand, 12325551 - 12325334
Alignment:
Q  220 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgtggcgaagtttgga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||  |||||||| |||    
T  12325551 aaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggctgcctatcttcctcggcggtgttg--gcgaagttcgga 12325454  T
Q  320 atattgccttagcttcttctgcatatgtgtgcatgctgtctatgtaagttgttagttatcattcatattaccaaaa---------tatagtatgtggaca 410  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         |||||||||||||||    
T  12325453 atattgccttagctgcttctgcatatgtgtgcatgctgtctatgtaagttgttagttatcatccatattaccaaaaaatattatctatagtatgtggaca 12325354  T
Q  411 cccaaaaattgttcattaaa 430  Q
    ||||||||||||||||||||    
T  12325353 cccaaaaattgttcattaaa 12325334  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 12325890 - 12325720
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  12325890 ataaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagt---a 12325794  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatata 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12325793 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcaccctatcacagtgcatata 12325720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 752
Target Start/End: Complemental strand, 20854097 - 20854061
Alignment:
Q  716 aacaggattactagaattgattctgcaagatcattag 752  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20854097 aacaggattactggaattgattctgcaagatcattag 20854061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 752 - 919
Target Start/End: Complemental strand, 18556812 - 18556646
Alignment:
Q  752 gtgttaaggttacaggaccaaggcttttaaattaagagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacac 851  Q
    ||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18556812 gtgttaaggttacaggaccaaggcttttaaattaagagatattc-tagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacac 18556714  T
Q  852 tgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttct 919  Q
    | ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18556713 tataattgactagagaaagtcaaaccatagctggaggaagcaattattaggacagcaaatatgtttct 18556646  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 11203588 - 11203439
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    ||||||||||||||||||| ||||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||      |    
T  11203588 ataaccgggttgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtacaatacctttgctgtagt------a 11203495  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatcac 163  Q
    |||||  |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11203494 gtaatgaaatcaaggatgaaagtccaatctattgtctccagaatagtaattatcac 11203439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 620 - 697
Target Start/End: Complemental strand, 11203402 - 11203324
Alignment:
Q  620 tatcaaagtattatgtgctagtatgcaccaacaaaaaagagc-aaacatatagatatcaatttaagaaggtaaagaggt 697  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||    
T  11203402 tatcaaagtattatgtgttagtatgcaccgacaaaaaagagcaaaacacatagatatcaatttaagaaggtaaggaggt 11203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 768 - 919
Target Start/End: Original strand, 86693 - 86848
Alignment:
Q  768 accaaggcttttaaattaagagatactag----tattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta 863  Q
    |||||||||||||||||||| |||| ||     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86693 accaaggcttttaaattaagtgatattatattctagtattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgatta 86792  T
Q  864 gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttct 919  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  86793 gagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtttct 86848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 784
Target Start/End: Original strand, 86645 - 86677
Alignment:
Q  752 gtgttaaggttacaggaccaaggcttttaaatt 784  Q
    |||||||||||||||||||||||||||||||||    
T  86645 gtgttaaggttacaggaccaaggcttttaaatt 86677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 916 - 966
Target Start/End: Original strand, 93475 - 93527
Alignment:
Q  916 ttctttcttactctc-tatgggtttgtcaattcaaa-tctgatccatcattat 966  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  93475 ttctttcttactctcctatggatttgtcaattcaaaatctgatccatcattat 93527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 8165978 - 8165833
Alignment:
Q  8 ataaccgggttgatgtaggtgagaaattgggtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagta 107  Q
    |||||||||||| || |  |||||||||| |||  || |||||||||||||||||||||||||||||||||| |||||  |||||         || |||    
T  8165978 ataaccgggttgttggaaatgagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgccctt---------gtggta 8165888  T
Q  108 gtaatagaatcaaggatgaaagtccaatctattgtctccagaatattaattatca 162  Q
     ||||  ||||||| ||||| |||||| |||||||||||| ||||| ||||||||    
T  8165887 ttaatgaaatcaagaatgaaggtccaacctattgtctccaaaatatcaattatca 8165833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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