View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-INSERTION-5 (Length: 776)
Name: NF1556-INSERTION-5
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-INSERTION-5 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 40306510 - 40306043
Alignment:
| Q |
7 |
atgtataacattatagtacttaactcatcaaatttgaatccattaatagttgatttaaattttaaaccaccctcggccatattatcaaataaacatattc |
106 |
Q |
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| T |
40306510 |
atgtataacattatagtacttaactcatcaaatttgaatccattaatatttgatttaaattttaaaccaccctcggccatattatcaaataaacatattc |
40306411 |
T |
|
| Q |
107 |
cttcgaccnnnnnnnnnntcaatttaacatattctaaaaacattaagtcattaaccatgacatattatgaaaagtgggggccttgtccttttcgtatgtt |
206 |
Q |
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| T |
40306410 |
tttcgacccaaaaaaaa-tcaatttaacatattctaaaaacattaagtcattaactatgacatattatgaaaagtgggggccttgtccttttcgtatgtt |
40306312 |
T |
|
| Q |
207 |
caaatgttcgacaaatcttctgggatatcatcaatttttctgagagtattggaannnnnnnncagttggatgggtgaggaggttatgtgctgaaggaaaa |
306 |
Q |
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| T |
40306311 |
gaaatgttggacaaaccttatgggatatcatcaatttttctgagagtattggaattttttttccgttggatgggtgaggaggttatgtgctgaaggaaaa |
40306212 |
T |
|
| Q |
307 |
attaaaattaatcaaaagatgcctgaaaacttggcatcaaaatcacactcagaaattgaaaggaaaaattaatacggtaaaagatggcatttcttctcct |
406 |
Q |
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| T |
40306211 |
attaaaattaatcaaaagatgcctgaaaacttggcatcaaaatcacactcaaaaattaaaaggaaaaatcaatacggtaaaagatcacatttcttctcct |
40306112 |
T |
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| Q |
407 |
gatattaagggggaggcgcgaattctggaggaggaagagttggaggagattcattctctatcaagtaat |
475 |
Q |
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| T |
40306111 |
gatattaagggggaggcgtgaattctggaggaggaagagttggaggagattcattctctatcaagtaat |
40306043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 466 - 733
Target Start/End: Complemental strand, 40305823 - 40305557
Alignment:
| Q |
466 |
atcaagtaatatcgagcaccctagtgtaggaaatttaaattttaaaatgttgagttggatgaatagaggttgtttgatcaaaccttgttgtagcaaatga |
565 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
40305823 |
atcaagtaatatccagcaccctagtgtaggaaatttaaattttaaaatattgagttggatgaatagagggggtttgatcaaaccttcttgtagcgaatga |
40305724 |
T |
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| Q |
566 |
ggtttttggtgatgtgtgtcaccttnnnnnnngacttattattatttaatgtggactatgtaaaagcttatgattttatggactagaagtatttgggaaa |
665 |
Q |
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|||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40305723 |
ggtttttgatgatgtgtgtcaccttaaaaaaagacttattaatatttaatgtggactatgtaaaagcttatgattttatggactagaagtattt-ggaaa |
40305625 |
T |
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| Q |
666 |
ctgttatggaaaagcctatgatttgtgtcttatcctctgacctccggtctattgtatttccttcttca |
733 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
40305624 |
ctgttatggaaaagcctatgatgtgtgtcttatcctctgacctctagtccattgtatttccttcttca |
40305557 |
T |
|
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