View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-INSERTION-7 (Length: 637)
Name: NF1556-INSERTION-7
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-INSERTION-7 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 28 - 342
Target Start/End: Complemental strand, 49299868 - 49299555
Alignment:
| Q |
28 |
ttgttatttatagtttaaagtttggacggaatctggaagaggaggacttaaaaagaatgagagacaaagatgtgaaccttgtgatttagctgacaaatca |
127 |
Q |
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| T |
49299868 |
ttgttatttatagtttaaagtttggacggaatgaacaa-aggaggacttaaaaagaatgagagacaaagatgtgaaccttgtgatttagctgacaaatca |
49299770 |
T |
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| Q |
128 |
aagagggattgcatggtttttgatgcttgtggaagtagctgtccaaattgagaaaggaaatcaatgcataaccttgaactgatcgattagctagagtggg |
227 |
Q |
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| T |
49299769 |
aagagggattgcatggtttttgatgcttgtggaagtagctgtccaaattgagaaaggaaatcaatgcataaccttgaactgatcgattagctagagtggg |
49299670 |
T |
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| Q |
228 |
acaaaagcaactatttagtttgtgtcagggaaattttgtgttttagtgaaatatagacataaaataggaattctcttagaacactagctgctctactaac |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49299669 |
acaaaagcaactatttagtttgtgtcagggaaattttgtgttttagtgaaatatagacataaaataggaattctctttgaacactagctgctctactaac |
49299570 |
T |
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| Q |
328 |
ttgacatcataaacc |
342 |
Q |
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| T |
49299569 |
ttgacatcataaacc |
49299555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 49299564 - 49299463
Alignment:
| Q |
359 |
atcataaaccttgtcctcttccagcttacattcattatgcttattacgtattgttatggttgattagaaagctgcggagagacatatacattatcatggt |
458 |
Q |
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| T |
49299564 |
atcataaaccttgtcctcttccagct-acattcattatgcttattacgtattgttatggttgattagaaagctgcggagagacatatacattatcatggt |
49299466 |
T |
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| Q |
459 |
tat |
461 |
Q |
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||| |
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| T |
49299465 |
tat |
49299463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 502 - 637
Target Start/End: Complemental strand, 49299464 - 49299339
Alignment:
| Q |
502 |
atgcaccaaccgaattaacgtctccttggttttttctattagtaaaagacacatttcatttttatttttgtgcttattggtatgcagagtgttgttttag |
601 |
Q |
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| T |
49299464 |
atgcaccaaccgaattaacgtctccttggttttttctattagtaaaagacacatttcat------ttttgtgcttattggtatgcagagtgttgttttag |
49299371 |
T |
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| Q |
602 |
gcgacttcttcttcgattggggtctatgaatctcgt |
637 |
Q |
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| T |
49299370 |
gtga---cttcttcgatt-gggtctatgaatctcgt |
49299339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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