View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1556-INSERTION-8 (Length: 600)
Name: NF1556-INSERTION-8
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-INSERTION-8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 600
Target Start/End: Original strand, 33636497 - 33637080
Alignment:
| Q |
7 |
agttatcaaatcaatgaatttcatttctaattttaaagttataaatattaatcagattgattgaaatcacccccttattatgtttctcaaaactttggaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33636497 |
agttatcaaatcaatgaatttcatttctaattttaaagttataaatattaatcagattgattgaaatcacccccttattatgtttctcaaaaatttggaa |
33636596 |
T |
|
| Q |
107 |
gaacaggtgtggcaaaacaatctgcttggtttactgtgcaataagcttgtctttagtttgatgcatattaaacctatcatgtacatatctttttattgaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || | ||||| ||||| |
|
|
| T |
33636597 |
gaacaggtgtggcaaaacaatctgcttggtttactctgcaatatgcttgtctttagtttgatgcatattaaacctatcatgtatat-ttttttttttgaa |
33636695 |
T |
|
| Q |
207 |
aaggaaaccgaaatatgcagtatttttcatcatgaagcacacataataagtgacaaaaactctag-cagtacccctgaacatctcatgcccaagctaagc |
305 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
33636696 |
aaggaaaccgaaacatgcaatatttttcatcatgaagcacacataataagtgacaaaaactctagccagtacccctgaacatctcatgtccaagctaagc |
33636795 |
T |
|
| Q |
306 |
taaaatagattnnnnnnncacatcaaccaactcaaagcatcacccttgcaaaagttccccatttgaaaagctgataggtaaaccaaccaatacacctcta |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33636796 |
taaaatagataaaaaaaacacatcaaccaactcaaagcatcacccctgcaaaagttccccattagaaaagcttataggtaaaccaaccaatacacctcta |
33636895 |
T |
|
| Q |
406 |
tttcaacatttatcataaaattgatatggggattgcatagtgtaaggaagaaatgatacttatattattacaattaaatgtgcacttctttatatgcttg |
505 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33636896 |
tttcaacatttatcataaagttgatatggggattgcatagtgtaagcaagaaatgatactt-----------attaaatgtgcacttctttatatgcttg |
33636984 |
T |
|
| Q |
506 |
gttgtacctgtcgttttttatccacggttctagattataaacttctgcgttaaagggaaaagca-gtaaagaagtcatcctttttgccatgatgac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33636985 |
gttgtacctgtcgttttttatccacggttctagattataaacatctgcattaaagggtaaagcaggtaaagaagtcatcctttttgccatgatgac |
33637080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University