View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-INSERTION-9 (Length: 632)
Name: NF1556-INSERTION-9
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-INSERTION-9 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 6 - 629
Target Start/End: Complemental strand, 53297333 - 53296722
Alignment:
| Q |
6 |
caatgggttgcatagcactgaaacctctagctttcctgtaccacaacaacctttatccgcaactttatatcctgcatgcatttaatgaagttaggaatta |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53297333 |
caatgggttgcatagcactgaaacctctagctttcctgtgccacaacaacctttatccgcaactttatatcctgcatgcatttaatgaagttaggaatta |
53297234 |
T |
|
| Q |
106 |
actaactaacttattaatt-aatcatcaatgattagattttactatacagtagcaattaaattacttaccatatttttgtggcttgagaattatatcaag |
204 |
Q |
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|||||||| | ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
53297233 |
actaactacttaattaatttaatcatcaatgattagatttta--------tagcaattaatttacttaccatatttttgtggcttgagaatgatatcaag |
53297142 |
T |
|
| Q |
205 |
taagggactgtaaatatcaatataaatgacgttactgttgggcaagttagagtgaagataatccaactccttggagagtttggaattgaataacttggct |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53297141 |
taagggactgtaaatatcaatataaatgacgttactattgggcaagttagagtgaagataatccaactccttggagagtttggaattgaataacttggct |
53297042 |
T |
|
| Q |
305 |
gcttcattgtacttctcattggtctttctaaatacacccccacctagagtcttctgtgatggtaagtacccaataggtgctgcactaaacactccaattc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53297041 |
gcttcattgtacttctcattggtctttctaaatacacccccacctagagtcttctgtgatggtaagtacccaataggtgctgcactaaacactccaattc |
53296942 |
T |
|
| Q |
405 |
tgcgtcctccaagtttatatatttccttaataaaatcagaggctcctttgaccataaggtcagcataagcaggaacatcgtagtgtagttgtctggtgcg |
504 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53296941 |
tgcgtgctccaagtttatatatttccttaataaaatcagaggctcctttgaccataaggtcagcataagcaggaacatcatagtgtagttgtctggtgcg |
53296842 |
T |
|
| Q |
505 |
aaatagtaaaataggtgttgggcaagatcatcacttccagctactataaaggaaaagagtatttgcaaggatgaagtttggccctattctctccaactac |
604 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| || |
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| T |
53296841 |
-aatagtaaaataggtgtt-ggcaaggtcatcacttccagctactat-aaggaaaagagtatttgctaggatgaagttt-gccctattctctccaaccac |
53296746 |
T |
|
| Q |
605 |
accttttaagcttcactatatattc |
629 |
Q |
| |
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||| ||||||||||||||| ||||| |
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| T |
53296745 |
acc-tttaagcttcactatgtattc |
53296722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 8290307 - 8290246
Alignment:
| Q |
10 |
gggttgcatagcactgaaacctctagctttcctgtaccacaacaacctttatccgcaacttt |
71 |
Q |
| |
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|||||||||| ||||| ||||||||| || ||||| |||||||||||| | ||| ||||||| |
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| T |
8290307 |
gggttgcataacactgcaacctctagtttccctgtgccacaacaacctctgtccacaacttt |
8290246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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