View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-10 (Length: 654)
Name: NF1556-Insertion-10
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-10 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 144 - 654
Target Start/End: Complemental strand, 1161186 - 1160667
Alignment:
| Q |
144 |
caaatattattaatccgaaaactctcgcaaaacgcaaacagacggtggcaataaaaacaaagatgccgcatataggcggaacatcaccccaaagac---- |
239 |
Q |
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| T |
1161186 |
caaatattattaatccgaaaactctcgcaagacgcaaagagacggtggcaataaaaacaaagatgccacatataggcggaacatcaccccaaagacccaa |
1161087 |
T |
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| Q |
240 |
----ataacctatagaaaacaattgatctctagaaccacaaaaacaaacaatcacaacaccacagaggcttgagctatggctctgaaatccaattatgaa |
335 |
Q |
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| T |
1161086 |
agacataacctatagaaaacaattgatctctagaaccacaaaaacaaacaatcacaacactacagaggcttgagttatggctctgaaatccaattatgaa |
1160987 |
T |
|
| Q |
336 |
ccatcaaaattcaaccccttagcaccgcctccaacagaccagcaaagctgccaccaaagaggccagaccttcctcaaaaaaccggctacacaacacaaca |
435 |
Q |
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| T |
1160986 |
ccatcaaaattcaaccccttagcaccgcctccaatagaccagcaaagctgccaccaaagaggccagaccttcctcaaaaaaccggctacacgacacaaca |
1160887 |
T |
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| Q |
436 |
aaacttgctggactgtcatgacagcatcgctgccagtgagcag-caacaccactggaccnnnnnnncaaaaggaggcagcaactcattaacgtgctaagc |
534 |
Q |
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| T |
1160886 |
aaacttgctggactgtcatgacagcatcgctgccagtgagcagccaacaccactggaccaaaaaaacaaaaggaggcagcagctcattaacgtgctaagc |
1160787 |
T |
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| Q |
535 |
aatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctccacgag |
634 |
Q |
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| T |
1160786 |
aatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctccacgag |
1160687 |
T |
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| Q |
635 |
ctcttcccaagttacaatga |
654 |
Q |
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| T |
1160686 |
ctcttcccaagttacaatga |
1160667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 1161331 - 1161220
Alignment:
| Q |
8 |
gcatcattcagcttacatgcatcttcaagaaacacaaaacctccttgagttgggttagcaatgattctctgcaaatatgtttgtcatgtgcgctcaaaaa |
107 |
Q |
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| T |
1161331 |
gcatcattcagcttacatgcatcttcaagaaacacaaaacctccttgagttgggttagcaatgattctctgcaaatatgtttgtcatgtacgctcaaaaa |
1161232 |
T |
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| Q |
108 |
atagacaaaagc |
119 |
Q |
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| T |
1161231 |
atagacaaaagc |
1161220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 880022 - 880107
Alignment:
| Q |
31 |
ttcaagaaacacaaaacctccttgagttgggttagcaatgattctctgcaaatatgtttgtcatgtgcgctcaaaaaatagacaaa |
116 |
Q |
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| T |
880022 |
ttcaagaagcaaaaaacctctttgaattgggttagcaatgattctctgcaaatatatttgtcatgaaggctcacaaaatagacaaa |
880107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 6645865 - 6645961
Alignment:
| Q |
137 |
gaaatgacaaatattattaatccgaaaactctcgcaaaacgcaaacagacggtggcaataaaa--acaaagatgccgcatataggcggaacatcaccc |
232 |
Q |
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| T |
6645865 |
gaaatgacaaatattattaaaccggaa-ctctcgcaatatgctaagagacggtaacagaaaaagtacaaagatgctgcatataggcgtaacatcaccc |
6645961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 334 - 479
Target Start/End: Original strand, 21113756 - 21113901
Alignment:
| Q |
334 |
aaccatcaaaattcaaccccttagcaccgcctccaacagaccagcaaagctgccaccaaagaggccagaccttcctcaaaaaaccggctacacaacacaa |
433 |
Q |
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||||| |||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||| |||||||| ||||| ||||| |||||||||||||| |
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| T |
21113756 |
aaccaccaaaattcaaccccatagcaccgcctccaacagcccagcaaagttgccacaaaagaccccagacctacctcacaaaacaggctacacaacacag |
21113855 |
T |
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| Q |
434 |
caaaacttgctggactgtcatgacagcatcgctgccagtgagcagc |
479 |
Q |
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| T |
21113856 |
caactggtgctggactgtcatgacagcagcgctgccagtgaacagc |
21113901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 531 - 631
Target Start/End: Complemental strand, 21977565 - 21977465
Alignment:
| Q |
531 |
aagcaatcccgcggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctcca |
630 |
Q |
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||||||||||| |||||||||||||||||||| ||||| || |||||||| ||||| | || ||||||||||||| ||| ||||||||||| |||| |
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| T |
21977565 |
aagcaatcccgaggactccaactccactcatagaacatgcaactcggagttgaggttctaccaataatccacctccaagacatcaccttcacctcttcca |
21977466 |
T |
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| Q |
631 |
c |
631 |
Q |
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| T |
21977465 |
c |
21977465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 630
Target Start/End: Original strand, 4636666 - 4636753
Alignment:
| Q |
543 |
ggactccaactccactcataaaacatacacgccggagttgtggttcggctaagcatccacctccaagtcattaccttcacctcctcca |
630 |
Q |
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|||| ||||||||||||||||||||| || |||||| ||||||||| | || ||||||||||| | || ||||||||| |||||| |
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| T |
4636666 |
ggacaccaactccactcataaaacatgcaagccggaattgtggttctaccgagaatccacctccacgacaacaccttcaccgcctcca |
4636753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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