View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1556-Insertion-11 (Length: 535)
Name: NF1556-Insertion-11
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 533
Target Start/End: Complemental strand, 8807881 - 8807356
Alignment:
| Q |
9 |
acttgccattattatgca-taaaagggagtgtcatgaacgcattgttttttctttaacacctaaactcaacaagttctttcacaaccactgtcactgcca |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
8807881 |
acttgccattattatgcaataaaagggagtgtcatgaacgcattgttttttctttaacacctaaactcaacaagttctttcactagcactgtccctgcca |
8807782 |
T |
|
| Q |
108 |
ctgctactagcaatgtttaatgttgttgtcctcatgaaatcttttctaacgatcatttttctacttcttttgttckttcatttaacttctaacctccaac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| |||||||| |
|
|
| T |
8807781 |
ctgctactagcaatgtttaatgttgttgtcctcatgaaatcttttcttactatcatttttctacttcttttgttctttcctttaacttcttccctccaac |
8807682 |
T |
|
| Q |
208 |
aagtgcaaacaaaactagttgaaccacctatgcttccaaaaaattcatgcaatgaaacatgtggaaaactccatgttccatttccattctacatcaacaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807681 |
aagtgcaaacaaaactagttgaaccacctttgcttccaaaaaattcatgcaatgaaacatgtggaaaactccatgttccatttccattctacatcaacaa |
8807582 |
T |
|
| Q |
308 |
cacttcatgtgcttcattgtcaagttctttccacctctcttgctcaaattcatccacccttttgatcaaaataggttcacaaaactatcccattttggaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807581 |
cacttcatgtgcttcattgtcaagttctttccacctctcttgctcaaattcatccacccttttgatcaaaataggttcacaaaactatcccattttggaa |
8807482 |
T |
|
| Q |
408 |
ttcttttcagatggtttgttagtagactttccaggaacctcatcgtgtcgacagtacaacgatctgaattcatttggtgagaggagttttgatggaagaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8807481 |
ttcttttcagatggtttgttagtagactttccaggaacctcatcgtgtcgacagtacaacgatttgaattcatttggtgagaggagttttgatggaagaa |
8807382 |
T |
|
| Q |
508 |
actactttggtgtatcagttgataat |
533 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8807381 |
actactttggtgtatcagttgataat |
8807356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 353 - 501
Target Start/End: Complemental strand, 22923937 - 22923789
Alignment:
| Q |
353 |
aaattcatccacccttttgatcaaaataggttcacaaaactatcccattttggaattcttttcagatggtttgttagtagactttccagga-acctcatc |
451 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||| || ||| ||||||| | |||| ||||||||||||||||| |||| || || || |
|
|
| T |
22923937 |
aaattcatctacccttttgaacaaaataggttcacaaaactatcttatcttgaaattcttcttagattgtttgttagtagacttt-taggatacatcgtc |
22923839 |
T |
|
| Q |
452 |
gtgtcgacagtacaacgatctgaattcatttggtgagaggagttttgatg |
501 |
Q |
| |
|
||||||| ||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
22923838 |
atgtcgacgatacaacgatttgaatttatttgaagagaggagttttgatg |
22923789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University