View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-12 (Length: 582)
Name: NF1556-Insertion-12
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Original strand, 55574020 - 55574595
Alignment:
| Q |
8 |
gatgcaacatgtttgccagtattatgttacatcactaacttatgtctatatttgatcatattcatgaatctaattttccttagactttagagtaaagtag |
107 |
Q |
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| T |
55574020 |
gatgcaacatgtttggcagtattatgttacatcactaacttatgtctatatttgatcatattcatgaatctaattttccttagactttagagttaagtag |
55574119 |
T |
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| Q |
108 |
gtaatt-caacacaagatactacacatgcatgataaattacgagcgagttaacatatcaatgagtannnnnnngtgtttgacagttgagattatttactt |
206 |
Q |
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| T |
55574120 |
gtaatttcaacacaagatactacacatgcatgataaattacgagcgagttaacatatcaatgagtatttttttgtgtttgacagttgagattatttactt |
55574219 |
T |
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| Q |
207 |
taatttactctatgtaagggacttatttgtgatttttaatttacagtttattgcagcatgtaaaaaaccacctgtgtactgtataataacagaatacatg |
306 |
Q |
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| T |
55574220 |
taatttactccatttaagggacttatttgtgatttttaatttacagtttattgcagcatgtaaaaaaccacctgtgtactgtataataacagaatacatg |
55574319 |
T |
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| Q |
307 |
tcacaaggaactctgaggatgtatctgaacaaaaaagagccttactcactttcaatagaaactgtactaaggttagcacttgacatatcaaggggtatgg |
406 |
Q |
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| T |
55574320 |
tcacaaggaactctgaggatgtatctgaacaaaaaagagccttactcactttcaatagaaactgtactaaggttagcacttgacatatcaaggggtatgg |
55574419 |
T |
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| Q |
407 |
aataccttcattctcaaggtgttattcatagagacctcaaatcaaataacttgcttctcaatgatgagatgagggttaaggtggcagatttcgggacatc |
506 |
Q |
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| T |
55574420 |
aataccttcattctcaaggtgttattcatagagacctcaaatcaaataacttgcttctcaatgatgagatgagggttaaggtggcagatttcgggacatc |
55574519 |
T |
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| Q |
507 |
gtgtcttgaaacacgatgccgagagaccaaaggaaacatgggaacttatcgttggatggcacctgagatgattaag |
582 |
Q |
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| T |
55574520 |
gtgtcttgaaacgcgatgccgagagaccaaaggaaacatgggaacttatcgttggatggcgcctgagatgattaag |
55574595 |
T |
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