View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556-Insertion-13 (Length: 525)

Name: NF1556-Insertion-13
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556-Insertion-13
NF1556-Insertion-13
[»] chr3 (1 HSPs)
chr3 (7-525)||(48015833-48016352)
[»] chr6 (16 HSPs)
chr6 (27-329)||(5422097-5422400)
chr6 (215-329)||(5366589-5366703)
chr6 (15-308)||(5107708-5108002)
chr6 (237-342)||(5358028-5358133)
chr6 (266-327)||(5139458-5139519)
chr6 (241-300)||(5077019-5077078)
chr6 (173-329)||(5070324-5070480)
chr6 (27-79)||(5070575-5070627)
chr6 (27-79)||(5149860-5149912)
chr6 (27-83)||(5160652-5160708)
chr6 (239-329)||(5340661-5340751)
chr6 (265-343)||(5429732-5429810)
chr6 (27-56)||(5366400-5366429)
chr6 (15-72)||(5443986-5444043)
chr6 (27-79)||(5092832-5092884)
chr6 (27-79)||(5429493-5429545)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Complemental strand, 48016352 - 48015833
Alignment:
Q  7 aagacacacgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgatcgcgcgcttccaaagggagatgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48016352 aagacacacgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgatcacgcgcttccaaagggagatgg 48016253  T
Q  107 cattccgacatcattaaaacgaacaatcaaaagtctcaaatttctattattgttttctcaaggaactatgtggaatcaagttggtgtatggatgagttgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48016252 cattccgacatcattaaaacgaacaatcaaaagtctcaaatttctattattgttttctcaaagaactatgtggaatcaagttggtgtatggatgagttgc 48016153  T
Q  207 tggaaatcatggagtgtcacaaaaccatttgccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcgg 306  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48016152 tggaaatcatggagtgtcacaaaaccataggccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcgg 48016053  T
Q  307 aatagcatttcaaaatcttttgacgaagatttcaaagagggaacgtaagttgtgtttagagaataagaactacaaattgcagcttcgtcagtattttgag 406  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48016052 aatagcatttcaaaatcttttgacgaagatttcaaagagggaacataagttgcgtttagagaataagaactacaaattgcagcttcgtcagtattttgag 48015953  T
Q  407 caagcatggagactggcacttcgcgaggcggctggccttgtaggatttgtagtcctaaactccaagtaa-ttcattcaacatttactgcttacaacttct 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  48015952 caagcatggagactggcacttcgcgaggcggctggccttgtaggatttgtagtcctaaactccaagtaatttcattcaacatttactgcttacaatttct 48015853  T
Q  506 ttaatgtgtgtttgaacggg 525  Q
    ||||||||||||||||||||    
T  48015852 ttaatgtgtgtttgaacggg 48015833  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 329
Target Start/End: Original strand, 5422097 - 5422400
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgatcgcgcgcttccaaagggagatggcattccgacatcattaaaac 126  Q
    ||||| ||||||||||||||||||||||| |  |||||||| ||||  |||||||||    |||||| ||  ||||||  |||| | |||||| |   ||    
T  5422097 acttcacatctctatgcttctcttcaaaattacggaattaaagttttcagggacgatgattcgcttcaaagaggagatcacatttcaacatcactcctac 5422196  T
Q  127 gaacaatcaaa-agtctcaaatttctattattgttttctcaaggaactatgtggaatcaagttggtgtatggatgagttgctggaaatcatggagtgtca 225  Q
    || ||||  || |||||| ||| ||||| || ||||||||||  || || | ||| |||   |||||| | ||||||||| || |||| |||||||||||    
T  5422197 gagcaattgaacagtctcgaatgtctatcatagttttctcaacaaattacgcggattcacaatggtgtcttgatgagttgttgaaaataatggagtgtca 5422296  T
Q  226 caaaaccatttgccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatctt 325  Q
    || ||||||| | ||| | |||||||||||||| | | | ||||||||||| |||||||||| |||||  ||||| || |||| ||||||||||||||||    
T  5422297 cagaaccattggacaaattgttctgccggtgttcttcgacgtagatccatccgaagtacgtcgtcaaaccggtgaatttggaaaagcatttcaaaatctt 5422396  T
Q  326 ttga 329  Q
    ||||    
T  5422397 ttga 5422400  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 5366589 - 5366703
Alignment:
Q  215 atggagtgtcacaaaaccatttgccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcat 314  Q
    ||||||||||| ||||||||| | ||| | ||||| || ||||| | ||||||||||||||||||||| ||||||||||  ||||| ||||||| |||||    
T  5366589 atggagtgtcagaaaaccattggacaaattgttcttccagtgttcttcaatgtagatccatcggaagtccgtcatcaaaccggtgaattcggaaaagcat 5366688  T
Q  315 ttcaaaatcttttga 329  Q
    |||||| ||||||||    
T  5366689 ttcaaattcttttga 5366703  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 5108002 - 5107708
Alignment:
Q  15 cgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgatcgcgcgcttccaaagggagatggcattccga 114  Q
    ||||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||    |||||  ||  ||| || ||||| | |    
T  5108002 cgtgcttccttcacttcacatctctatgcttctcttcagaacgctggaatcaacgtttttagagacgatgattcgcttaaaagaggacattgcatttcaa 5107903  T
Q  115 catcattaaaacgaacaa-tcaaaagtctcaaatttctattattgttttctcaaggaactatgtggaatcaagttggtgtatggatgagttgctggaaat 213  Q
     |||| |||||||| ||| | || | ||| |||||||||||||  |||||||||  || |||| | ||||  |||||||| |  |||||||| ||   ||    
T  5107902 aatcaataaaacgagcaattgaagaatctgaaatttctattatcattttctcaaaaaattatgcgaaatcgcgttggtgtctaaatgagttgttgacgat 5107803  T
Q  214 catggagtgtcacaaaaccatttgccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaa 308  Q
     |||||||||| || || |||  | || ||||| || |||||||| ||  |||| ||||| || |||||||||||||||| ||||||||| ||||    
T  5107802 aatggagtgtcgcagaagcatagggcaggtggtgcttccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttggaa 5107708  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 5358133 - 5358028
Alignment:
Q  237 gccaagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatcttttgacgaagat 336  Q
    ||||||| ||| |||| ||||| |||  |||||||||||| ||||||||| |||||| |||||||||||||| ||||||||||| ||| ||||  | |||    
T  5358133 gccaagttgttttgccagtgttctacggtgtagatccatctgaagtacgtaatcaaactggtgagttcggaaaagcatttcaaagtctattgaaaaggat 5358034  T
Q  337 ttcaaa 342  Q
    ||||||    
T  5358033 ttcaaa 5358028  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 5139519 - 5139458
Alignment:
Q  266 gtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatctttt 327  Q
    ||||||||||| ||||||||||||||||  ||||| ||||||| ||| ||||||||||||||    
T  5139519 gtagatccatctgaagtacgtcatcaaaccggtgaattcggaaaagcttttcaaaatctttt 5139458  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 5077078 - 5077019
Alignment:
Q  241 agtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtga 300  Q
    ||||||||| ||||| ||||||  |||||||||||| |||||||||||||||| ||||||    
T  5077078 agtggttctaccggttttttacggtgtagatccatctgaagtacgtcatcaaactggtga 5077019  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 329
Target Start/End: Complemental strand, 5070480 - 5070324
Alignment:
Q  173 tatgtggaatcaagttggtgtatggatgagttgctggaaatcatggagtgtcacaaaaccatttgccaagtggttctgccggtgttttacaatgtagatc 272  Q
    |||| ||||||| | |||||| | ||||||||| || | || ||||| ||| | | ||||||| | ||| | |||||||| ||||| |   | |||||||    
T  5070480 tatgcggaatcacgatggtgtcttgatgagttggtgaagataatggaatgtaatagaaccattggacaaattgttctgccagtgttcttagacgtagatc 5070381  T
Q  273 catcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatcttttga 329  Q
    |||||||||| ||||||||||    ||| ||||||| ||||||||||| ||||||||    
T  5070380 catcggaagtccgtcatcaaacctctgaattcggaaaagcatttcaaattcttttga 5070324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 5070627 - 5070575
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaactctggaattaacgtttataggga 79  Q
    ||||| ||||||||||||||||||| |||||||||||| || |||| ||||||    
T  5070627 acttcacatctctatgcttctcttcgaaactctggaatcaaagtttttaggga 5070575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 5149912 - 5149860
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaactctggaattaacgtttataggga 79  Q
    ||||| |||||||||||||||||||||||  |||||||||| |||| ||||||    
T  5149912 acttcacatctctatgcttctcttcaaaatgctggaattaaagtttttaggga 5149860  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 5160708 - 5160652
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaactctggaattaacgtttatagggacgat 83  Q
    ||||| |||||||||||| | ||||||||| ||||| ||||||||| ||||||||||    
T  5160708 acttcacatctctatgctgcacttcaaaacgctggacttaacgtttttagggacgat 5160652  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 5340661 - 5340751
Alignment:
Q  239 caagtggttctgccggtgttttacaatgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatcttttga 329  Q
    ||||| ||||| ||| | || ||| |||| ||||| || ||| ||||||||||||  || ||||| |||| ||||||||||||||||||||    
T  5340661 caagttgttctaccgatattctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttga 5340751  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 5429732 - 5429810
Alignment:
Q  265 tgtagatccatcggaagtacgtcatcaaattggtgagttcggaatagcatttcaaaatcttttgacgaagatttcaaag 343  Q
    ||||||||||||  ||||||| |||||||| ||||| || |||| ||| ||||||| ||| ||||  ||||||||||||    
T  5429732 tgtagatccatctcaagtacgacatcaaatcggtgactttggaaaagcctttcaaagtctcttgaataagatttcaaag 5429810  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 5366400 - 5366429
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaac 56  Q
    ||||||||||||||||||||||||||||||    
T  5366400 acttcgcatctctatgcttctcttcaaaac 5366429  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 5443986 - 5444043
Alignment:
Q  15 cgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgttt 72  Q
    ||||||||||| ||||| ||||| |||||| ||||||||||  |||||||||| ||||    
T  5443986 cgtgcttccttcacttcacatctgtatgctgctcttcaaaaggctggaattaaggttt 5444043  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 5092832 - 5092884
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaactctggaattaacgtttataggga 79  Q
    ||||| |||||||||||||| ||||||||  |||||||||| |||| ||||||    
T  5092832 acttcacatctctatgcttcacttcaaaatgctggaattaatgtttttaggga 5092884  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 5429493 - 5429545
Alignment:
Q  27 acttcgcatctctatgcttctcttcaaaactctggaattaacgtttataggga 79  Q
    ||||| |||||||||||||||||||||||  |||||||||  |||| ||||||    
T  5429493 acttcacatctctatgcttctcttcaaaatgctggaattactgtttttaggga 5429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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