View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-14 (Length: 494)
Name: NF1556-Insertion-14
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-14 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 15049573 - 15049247
Alignment:
| Q |
8 |
ctttctgcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccaccacggccgtttacattgtgaa |
107 |
Q |
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| T |
15049573 |
ctttctgcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccaccaccgccgtttacattgtgaa |
15049474 |
T |
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| Q |
108 |
ccaaaggaatttggaaagaaggggcgacaaagataagaagttaggcagcggccgatacagtgagaagagagaaagggtgttagataataatgattaatta |
207 |
Q |
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| T |
15049473 |
ccaaaggaatttggaaagaaggggcgacagagataagaatttaggcagcggccgatacagtgagaagagagaaagggtgttagataataatgattaatta |
15049374 |
T |
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| Q |
208 |
atcattcaaatatgcaataatagccattatgatacgtaataacaacatttaaaatatgcaataatagtcctttcaaattaaatatgtaataatagccatt |
307 |
Q |
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| T |
15049373 |
atcattcaaatatgcaataatagccattatgatatgtaataacaacatttaaaatatgcaataatagtcctttcaaattaaatatgtaataatagccatt |
15049274 |
T |
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| Q |
308 |
atgatatgtaataacaacatttcaaat |
334 |
Q |
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| T |
15049273 |
atgatatgtaataacaacatttcaaat |
15049247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 327 - 494
Target Start/End: Complemental strand, 15049231 - 15049065
Alignment:
| Q |
327 |
tttcaaattaaatatgtaataatagccattgtaataatatagaataacaacaactatttgaaagtttccctnnnnnnnnnncaaataattgaaagttgat |
426 |
Q |
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| T |
15049231 |
tttcaaattaaatatgtaacaatagccattgtaataatatacaataacaacaactatttgaaagtttccctaaaaaaaaa-caaattattgaaagttgat |
15049133 |
T |
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| Q |
427 |
atcattgacattttctgaggggccgtcatcaatttttatttttcaaaaccatttcaataacaacaata |
494 |
Q |
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| T |
15049132 |
agcattgacattttctgaggggccgtcataaatttttatttttcaaaaccatttcaataacaacaata |
15049065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 15049294 - 15049202
Alignment:
| Q |
215 |
aaatatgcaataatagccattatgatacgtaataacaacatttaaaatatgcaataatagtcctttcaaattaaatatgtaataatagccatt |
307 |
Q |
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| T |
15049294 |
aaatatgtaataatagccattatgatatgtaataacaacatttcaaatatgcaataatagtcctttcaaattaaatatgtaacaatagccatt |
15049202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 356
Target Start/End: Complemental strand, 15049303 - 15049274
Alignment:
| Q |
327 |
tttcaaattaaatatgtaataatagccatt |
356 |
Q |
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| T |
15049303 |
tttcaaattaaatatgtaataatagccatt |
15049274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 26841513 - 26841348
Alignment:
| Q |
15 |
cgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccaccacggccgtttacattgtgaaccaaagg |
114 |
Q |
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| T |
26841513 |
cgaaatcaacgccgagagaatagtgaccagtggtgatgcggatggctgttccatattcgcaccatcagccacca---ccgtttacattatgaaccaaaag |
26841417 |
T |
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| Q |
115 |
aatttggaaagaaggggcgacaaagataagaagttaggcagcggccgatacagtgagaagagagaaagg |
183 |
Q |
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| T |
26841416 |
aatttggaaagaagggacagcgggggtaagaagttagatggcggccgatatagtgagaagagagaaagg |
26841348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 1654178 - 1654282
Alignment:
| Q |
43 |
agaggtgatgcggatggttgttccatcttcgcaccttcagccaccacggccgtttacattgtgaaccaaaggaatttggaaagaaggggcgacaaagata |
142 |
Q |
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| T |
1654178 |
agaggtgatgcggatggtt-ttccatcttcgcaccaccacccacc---gccgtttacattgagaaccaaagaaatttggaaagaaggggcggcagagata |
1654273 |
T |
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| Q |
143 |
agaagttag |
151 |
Q |
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| T |
1654274 |
aggagttag |
1654282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 22302 - 22376
Alignment:
| Q |
14 |
gcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccacca |
88 |
Q |
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| T |
22302 |
gcgaaatcaccgccaagagaacaaggactggaggtgatgcggatggatgttccatcttcgcaccaccagccacca |
22376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 5745566 - 5745492
Alignment:
| Q |
14 |
gcgaaatcagcgccgagagaacagtgactagaggtgatgcggatggttgttccatcttcgcaccttcagccacca |
88 |
Q |
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| T |
5745566 |
gcgaaatcaccgccaagagaacaaggaccggaggtgatgcggatggatgttccatcttcgcaccaccagccacca |
5745492 |
T |
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