View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-15 (Length: 385)
Name: NF1556-Insertion-15
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 31185344 - 31184967
Alignment:
| Q |
8 |
aatggtactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaaggct |
107 |
Q |
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| T |
31185344 |
aatggtactgattattggattgtgaagaattcatggggcactgtgtggggtgaaaaagggtacataaggatgcaaagaggtatagctgctaaggaaggct |
31185245 |
T |
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| Q |
108 |
tgtgtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaaca |
207 |
Q |
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| T |
31185244 |
tatgtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaaca |
31185145 |
T |
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| Q |
208 |
tatggctacatgaatgtaaacttatattttagaaacattaaatatacacttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgtat |
307 |
Q |
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| T |
31185144 |
tatggctacatgaatttaaacttatattttagaaacattaaatatacacttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgtat |
31185045 |
T |
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| Q |
308 |
atgttcatctctatttctctgactttttaccttctacaacttacacatattaagacatgattgaaatttgaaacagta |
385 |
Q |
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| T |
31185044 |
atgttcatctttatttctctgaatttttaccttctacaacttacacatattaagacatgattgaaatttgaaacagta |
31184967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 31194171 - 31193991
Alignment:
| Q |
8 |
aatggtactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaaggct |
107 |
Q |
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| T |
31194171 |
aatgggactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgataaggaaggct |
31194072 |
T |
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| Q |
108 |
tgtgtggtattgccatggattcttcttatccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttt |
188 |
Q |
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| T |
31194071 |
tatgtggtattgcaatggattcttcttatccaactgcttaacctgttgaattatgtaacttgtgtctcaagcttgtatttt |
31193991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 31176520 - 31176461
Alignment:
| Q |
13 |
tactgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacat |
72 |
Q |
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| T |
31176520 |
tactgagtattggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacat |
31176461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 31727566 - 31727636
Alignment:
| Q |
14 |
actgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaag |
84 |
Q |
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| T |
31727566 |
actgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattaggatgcaaag |
31727636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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