View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-16 (Length: 377)
Name: NF1556-Insertion-16
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-174
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 46252312 - 46252671
Alignment:
| Q |
8 |
aataaaacaactataatagtattatctaacttcttctttcaaactcacgatgcattaataaagaatatcaatagtttgtcsattaagtaagaatgttaac |
107 |
Q |
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| T |
46252312 |
aataaaacaactataatagtattatctaacttcttctttcaaactcacgatgcattaataaagaatatcaataatttgtcgatcaagtaagaatgttaac |
46252411 |
T |
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| Q |
108 |
tcatataattaacattaaaatcttcaagatgactctaaaggaaacttcaagactctgatcaacgtgtggcttatgaaacaatgtgcaccatcaaaaacgt |
207 |
Q |
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| T |
46252412 |
tcatataattaacattaaaatcttcaagatgactctaaaggagacttcaagactctgatcaacgtgtggcttatgaaacaatgtgcaccatcaaaaacgt |
46252511 |
T |
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| Q |
208 |
caaacatataaaacaaatgatgagtaatcaaatcatgttaaggtactacacttgatccaacaatcaaaatgataatagtcatatcaaagctcgactagac |
307 |
Q |
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| T |
46252512 |
caaacatataaaacaaatgatgagtaatcaaatcatgttaaggtac------tggtccaacaatcaaaatgataatagtcatatcaaagctcgactagac |
46252605 |
T |
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| Q |
308 |
ataatccttttgcctcctatatggacaaatcatcttccaagttttaatatattgtgttaaaatgaaatga |
377 |
Q |
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| T |
46252606 |
ataatccttttgcctcctatatggacagatcatcttccaagtttta----attgtgttaaaatgaaatga |
46252671 |
T |
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