View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1556-Insertion-17 (Length: 362)

Name: NF1556-Insertion-17
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1556-Insertion-17
NF1556-Insertion-17
[»] chr1 (7 HSPs)
chr1 (261-362)||(28666773-28666874)
chr1 (7-130)||(28666876-28666999)
chr1 (214-337)||(41941005-41941131)
chr1 (214-295)||(30848889-30848967)
chr1 (78-245)||(6397661-6397820)
chr1 (68-105)||(7440960-7440997)
chr1 (294-335)||(44608575-44608616)
[»] chr5 (3 HSPs)
chr5 (68-261)||(41715022-41715207)
chr5 (75-237)||(7237068-7237225)
chr5 (68-338)||(38755532-38755786)
[»] chr8 (6 HSPs)
chr8 (68-245)||(14958008-14958180)
chr8 (83-199)||(15292567-15292680)
chr8 (83-199)||(15472936-15473049)
chr8 (76-137)||(9293232-9293293)
chr8 (270-339)||(34697194-34697263)
chr8 (296-338)||(34695916-34695958)
[»] chr2 (2 HSPs)
chr2 (62-293)||(38288428-38288647)
chr2 (68-272)||(31395151-31395341)
[»] chr6 (8 HSPs)
chr6 (70-236)||(33908574-33908728)
chr6 (68-292)||(9627135-9627333)
chr6 (71-275)||(1415476-1415672)
chr6 (68-159)||(12155387-12155476)
chr6 (293-338)||(33908741-33908786)
chr6 (246-296)||(10384091-10384141)
chr6 (168-236)||(12155933-12155998)
chr6 (289-334)||(9405126-9405171)
[»] chr3 (6 HSPs)
chr3 (68-195)||(11630060-11630186)
chr3 (58-192)||(8543073-8543210)
chr3 (77-143)||(8541448-8541515)
chr3 (108-151)||(43361690-43361733)
chr3 (246-280)||(8540980-8541014)
chr3 (246-280)||(8543031-8543065)
[»] chr4 (3 HSPs)
chr4 (75-200)||(865245-865368)
chr4 (173-293)||(3284192-3284307)
chr4 (61-136)||(3284089-3284166)
[»] scaffold0035 (1 HSPs)
scaffold0035 (70-243)||(24407-24574)
[»] chr7 (1 HSPs)
chr7 (69-120)||(15077104-15077155)
[»] scaffold0027 (2 HSPs)
scaffold0027 (70-136)||(43611-43677)
scaffold0027 (256-337)||(43790-43870)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 28666874 - 28666773
Alignment:
Q  261 cgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaaatgctggttgaagggactagt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666874 cgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaaatgctggttgaagggactagt 28666775  T
Q  361 tc 362  Q
    ||    
T  28666774 tc 28666773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 28666999 - 28666876
Alignment:
Q  7 atgagggagtttgaattaggaaannnnnnnnnatagacatagctaacattaatgttgttagaacaactagtaacaaaagattaaataagagaacgaaaga 106  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28666999 atgagggagtttgaattaggaaaaacaaatttatagacatagctaacattaatgttgttagaacaactagtaacaaaagattaaataagagaacgaaaga 28666900  T
Q  107 gaaagacaatgaacgcatgatatt 130  Q
    ||||||||||||||||| ||||||    
T  28666899 gaaagacaatgaacgcacgatatt 28666876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 337
Target Start/End: Complemental strand, 41941131 - 41941005
Alignment:
Q  214 gaatcagggtttcagtgttacaagcaatatattata-tagtactactacgattcagtttacaatattactcctgaaccgtac---cttgccttcttccgt 309  Q
    |||| ||||||||| ||||||||| ||||||| ||| || ||||||||||||||||||||||||||||| ||| |||||||    | |||||||||   |    
T  41941131 gaattagggtttcaatgttacaagtaatatat-atactactactactacgattcagtttacaatattacccctaaaccgtatactcatgccttctttaat 41941033  T
Q  310 gtcttgtatatatgagccatacttcaac 337  Q
    |||||||||||||||| |||||||||||    
T  41941032 gtcttgtatatatgagtcatacttcaac 41941005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 30848967 - 30848889
Alignment:
Q  214 gaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagtttacaatattactcctgaaccgtacc 295  Q
    |||| ||||||| |||| ||||| ||||||||   ||||||| ||||| ||||||||||||||||||| | |||||||||||    
T  30848967 gaattagggtttaagtggtacaaacaatatat---atagtaccactacaattcagtttacaatattacccttgaaccgtacc 30848889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 6397661 - 6397820
Alignment:
Q  78 aacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaataga 177  Q
    |||| |||||||||||||||||| ||||  ||| |||| ||||  |  ||||||||||||| | || | ||| |||||||||  |||||  ||| |||||    
T  6397661 aacataagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaacgcacttcggcca-ttgtgccta--cctctgtgactataga 6397757  T
Q  178 gcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatat 245  Q
    ||| ||||||||  |||||||||||||   ||||  |||  | |||||||||||||||||||||||||    
T  6397758 gcagctatagttttgtttctattactg---tgat--gaactaaggtttcagtgttacaagcaatatat 6397820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 7440997 - 7440960
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaag 105  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  7440997 aacatctagtaacataagattaaataagagaacgaaag 7440960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 44608575 - 44608616
Alignment:
Q  294 ccttgccttcttccgtgtcttgtatatatgagccatacttca 335  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||    
T  44608575 ccttgacttcttcagtgtcttctatatatgagccatacttca 44608616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 41715207 - 41715022
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  | ||| || ||||| | |||| |  ||||||||||||  ||||||    
T  41715207 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatacgatctt-gttaatgcagttcggacaattgtgccta--cctcta 41715111  T
Q  168 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactac 261  Q
    |||| |||||||| |||||||||||||||||||||||   |||| ||||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  41715110 cgacgatagagcatctatagttccgtttctattactg---tgatgagaat-aggggttcagtgttacaagcaatata-tatatagtaccactac 41715022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 7237068 - 7237225
Alignment:
Q  75 agtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaat 174  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| || |||| | |||||| ||  | ||||||| || | ||    
T  7237068 agtaacaaaagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttg--tctacctctgcggctat 7237165  T
Q  175 agagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaag 237  Q
    |||||| ||||| |||| ||| ||||||||   |||| ||||| |||||||| ||||||||||    
T  7237166 agagcagctataattccatttttattactg---tgataagaattagggtttcggtgttacaag 7237225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 338
Target Start/End: Complemental strand, 38755786 - 38755532
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||| ||  |||||||||||   ||||||  ||||||||||  |||||||     
T  38755786 aacaactagtaacaaaagattaaataagagaacgaaagagaaag---atgaacacaccatatttgttaatacagtttggtcaattgtgcc--tacctctg 38755692  T
Q  168 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattca 267  Q
    |||  |||||  |  ||||||||     |||||||||   |||| | ||| || |||| |||||||||| |  ||   ||||||| |||||||||| |||    
T  38755691 cgattatagaatagttatagttc-----ctattactg---tgataaaaat-agagttttagtgttacaaactgta---tatatagcactactacgactca 38755604  T
Q  268 gtttacaatattactcctgaaccgt-accttgccttcttccgtgtcttgtatatatgagccatacttcaaca 338  Q
    | ||||||||||||  ||||||||| || |||||||||||  | |||| |||||||||| ||||||||||||    
T  38755603 ggttacaatattaccactgaaccgtaacattgccttcttcaatatcttctatatatgagtcatacttcaaca 38755532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 14958180 - 14958008
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 167  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||  | |||||||||||||  |||| | |||||||||||  |||||||     
T  14958180 aacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaattgtgcc--tacctctg 14958083  T
Q  168 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatat 245  Q
    |||  |||||||| ||||||||  |||||||||||||   |||  ||||| |||||||||||||||||||||||||||    
T  14958082 cgattatagagcagctatagttatgtttctattactg---tgagaagaattagggtttcagtgttacaagcaatatat 14958008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 15292567 - 15292680
Alignment:
Q  83 aagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaac 182  Q
    |||||||||||||||||||||||  ||||  ||||||| || |||| ||||||||| |||| ||||||||||||||||  ||||||||| ||| ||||||    
T  15292567 aagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctat--ctctacgactataaagcaac 15292663  T
Q  183 tatagttccgtttctat 199  Q
    |||||||  ||||||||    
T  15292664 tatagttttgtttctat 15292680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 15472936 - 15473049
Alignment:
Q  83 aagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaatagagcaac 182  Q
    |||||||||||||||||||||||  ||||  ||||||| || |||| ||||||||| |||| ||||||||||||||||  ||||||||| ||| ||||||    
T  15472936 aagattaaataagagaacgaaagtaaaagttaatgaacacacgata-ttgttaacgcagttcgaccaattgtgcctat--ctctacgactataaagcaac 15473032  T
Q  183 tatagttccgtttctat 199  Q
    |||||||  ||||||||    
T  15473033 tatagttttgtttctat 15473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 9293232 - 9293293
Alignment:
Q  76 gtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaac 137  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  9293232 gtaacaaaagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaac 9293293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 34697263 - 34697194
Alignment:
Q  270 ttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaacaa 339  Q
    |||||||||||   |||||  ||||||| |||||||| |||||||||||||||||| | |||||||||||    
T  34697263 ttacaatattatctctgaattgtacctttccttcttctgtgtcttgtatatatgagtcgtacttcaacaa 34697194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 34695958 - 34695916
Alignment:
Q  296 ttgccttcttccgtgtcttgtatatatgagccatacttcaaca 338  Q
    ||||||||||| | |||||||||||||||| ||||||||||||    
T  34695958 ttgccttcttcggagtcttgtatatatgagtcatacttcaaca 34695916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 293
Target Start/End: Original strand, 38288428 - 38288647
Alignment:
Q  62 tgttagaacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctata 161  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| | ||||||||    ||     
T  38288428 tgttagaacaactagtaacaaaagattaaataagagattgaaagagaaagacaattaacacatgatatttgttaacgtagttcggccaattgt---aat- 38288523  T
Q  162 cctctacgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactac 261  Q
        | |||| ||||||||  |||||||  ||||||||| ||    |||| ||||| ||||||||| ||||| |||||||||| |||||| |||||||||    
T  38288524 ----tgcgactatagagcatttatagttatgtttctatttct---atgatgagaattagggtttcaatgttataagcaatata-tatataatactactac 38288615  T
Q  262 gattcagtttacaatattactcctgaaccgta 293  Q
    |||||  ||||||||||||| ||| |||||||    
T  38288616 gattctctttacaatattacccctaaaccgta 38288647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 272
Target Start/End: Original strand, 31395151 - 31395341
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 167  Q
    ||||||||||||||||| || |||||||| ||||||||  ||||||||||||| ||||||||||||||||  || | | ||||| |||| ||    ||||    
T  31395151 aacaactagtaacaaaatat-aaataagaaaacgaaagtaaaagacaatgaacacatgatatttgttaacacagctcgtccaatggtgctta----tcta 31395245  T
Q  168 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattca 267  Q
     | | ||| |||| ||||| |||||||| ||||||||   |||||      ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  31395246 tggctataaagcagctataattccgtttatattactgcgatgatt------agggtttcagtgttacaagcaata---tatatagtactactacgattca 31395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 33908574 - 33908728
Alignment:
Q  70 caactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacg 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||  ||||          
T  33908574 caactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcc--tacc------ 33908665  T
Q  170 acaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaa 236  Q
     | |||||||  |||||||||||||||||||||||   ||||  |||| ||||||||||||||||||    
T  33908666 -ctatagagctgctatagttccgtttctattactg---tgataggaattagggtttcagtgttacaa 33908728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 68 - 292
Target Start/End: Original strand, 9627135 - 9627333
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctcta 167  Q
    ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||  ||||   ||||||||| ||             
T  9627135 aacaactagaaacaaaagattaaataagagaatgaaagagaaacacaatgaacacatgatatttgttaacccagttcagccaattgtgtct--------- 9627225  T
Q  168 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattca 267  Q
             |||| ||||||||| |||||||| ||||   |||| ||||| ||||||||||||||||||||||     ||||||||||||||||||||||    
T  9627226 ---------agcagctatagttctgtttctatcactg---tgataagaattagggtttcagtgttacaagcaa-----tatatagtactactacgattca 9627308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 1415672 - 1415476
Alignment:
Q  71 aactagtaacaaaagattaaataagagaacgaaagagaaa-gacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacg 169  Q
    ||||| |||||||||||||| ||||||||||||||||||| |||||| ||  || |||| ||||||||| |||| | ||||||||| |||  ||||||||    
T  1415672 aactaataacaaaagattaa-taagagaacgaaagagaaaagacaataaatacacgatacttgttaacgcagttcggccaattgtggcta--cctctacg 1415576  T
Q  170 acaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatatagtactactacgattcagt 269  Q
    |  |||||||| ||||||||| |||||||||| ||   |||| ||||| ||||||||| |||||||||   ||   ||||||||||||||| ||||||||    
T  1415575 attatagagcagctatagttctgtttctattattg---tgataagaattagggtttcaatgttacaagttgta---tatatagtactactatgattcagt 1415482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 12155387 - 12155476
Alignment:
Q  68 aacaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgccta 159  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||||||| ||  |||||| |||||  |||| | | |||||||||||    
T  12155387 aacaactagtaacaaaaaatta--taagagaacgaaagagaaagacaatgaacacacaatattttttaacacagttcggcaaattgtgccta 12155476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 33908741 - 33908786
Alignment:
Q  293 accttgccttcttccgtgtcttgtatatatgagccatacttcaaca 338  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  33908741 accttaccttcttcagtgtcttgtatatatgagccatacttcaaca 33908786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 10384091 - 10384141
Alignment:
Q  246 tatatagtactactacgattcagtttacaatattactcctgaaccgtacct 296  Q
    ||||||| ||||||||||||||||||| |||||||| | ||||||||||||    
T  10384091 tatatagaactactacgattcagtttataatattacccatgaaccgtacct 10384141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 12155933 - 12155998
Alignment:
Q  168 cgacaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaa 236  Q
    |||| |||| |||||||||||||||||||||||||||   |||| ||||| ||| ||||||||||||||    
T  12155933 cgactatagggcaactatagttccgtttctattactg---tgataagaattaggatttcagtgttacaa 12155998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 9405171 - 9405126
Alignment:
Q  289 ccgtaccttgccttcttccgtgtcttgtatatatgagccatacttc 334  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||    
T  9405171 ccgtcccttgccttctttagtgtcttgtatatatgagccatacttc 9405126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 11630186 - 11630060
Alignment:
Q  68 aacaactagtaacaaaa-gattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctct 166  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |  | |||||||||||||  |||||| ||||||||||  |||| |||    
T  11630186 aacaactagtaacaaaaagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaacacagtttggccaattgtgc--atacatct 11630089  T
Q  167 acgacaatagagcaactatagttccgttt 195  Q
    ||||| ||| ||||| |||||||||||||    
T  11630088 acgactataaagcaattatagttccgttt 11630060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 8543210 - 8543073
Alignment:
Q  58 atgttgttagaacaac----tagtaacaaaagattaaataagagaacgaa-agagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaatt 152  Q
    ||||||||||||||||    || ||||||||||||||||||||||||||| | |||||||||||||||  | |||||||||||||| |||| | ||||||    
T  8543210 atgttgttagaacaacaacatattaacaaaagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaatt 8543111  T
Q  153 gtgcctatacctctacgacaatagagcaactatagttccg 192  Q
    |||||  ||||||   ||| ||||| ||||||||||||||    
T  8543110 gtgcc--tacctcggtgactatagaacaactatagttccg 8543073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 8541515 - 8541448
Alignment:
Q  77 taacaaaagattaaataagagaacgaa-agagaaagacaatgaacgcatgatatttgttaacgtagtt 143  Q
    ||||||||||||||||||||||||||| |||||||||||| | || || |||||||||||||| ||||    
T  8541515 taacaaaagattaaataagagaacgaagagagaaagacaacgcacacacgatatttgttaacgcagtt 8541448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 43361733 - 43361690
Alignment:
Q  108 aaagacaatgaacgcatgatatttgttaacgtagtttgaccaat 151  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  43361733 aaagacaatgaacacatgatatttgttaacgtagtttggccaat 43361690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 8541014 - 8540980
Alignment:
Q  246 tatatagtactactacgattcagtttacaatatta 280  Q
    |||||||||||||||||||||||||||||||||||    
T  8541014 tatatagtactactacgattcagtttacaatatta 8540980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 8543065 - 8543031
Alignment:
Q  246 tatatagtactactacgattcagtttacaatatta 280  Q
    |||||||||||||||||||||||||||||||||||    
T  8543065 tatatagtactactacgattcagtttacaatatta 8543031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 865245 - 865368
Alignment:
Q  75 agtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacgacaat 174  Q
    |||||||||| ||||||||||||||||||||  ||||| ||||||  || ||||||||||||||| ||| || ||||||||  | || ||||||||| ||    
T  865245 agtaacaaaaaattaaataagagaacgaaagtaaaagaaaatgaaaacacgatatttgttaacgtggttcgatcaattgtg--tttatctctacgactat 865342  T
Q  175 agagcaactatagttccgtttctatt 200  Q
    |||| | ||||| |||||||||||||    
T  865343 agagtagctataattccgtttctatt 865368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 3284192 - 3284307
Alignment:
Q  173 atagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatatattatat-agtactactacgattcagttt 271  Q
    ||||| ||| ||||||||||||| |||||||||   |||  |||| ||||||| || ||||||||||| |||| |||| | ||||||||| ||| |||||    
T  3284192 atagaacaattatagttccgtttttattactgt---gat--gaattagggttttagcgttacaagcaaaatat-atattactactactacaattaagttt 3284285  T
Q  272 acaatattactcctgaaccgta 293  Q
    |||||||||||| |||||||||    
T  3284286 acaatattactcttgaaccgta 3284307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 3284089 - 3284166
Alignment:
Q  61 ttgttagaacaac--tagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaa 136  Q
    |||||||||||||  || ||||| |||||||||||| ||| ||||||  |||||||||||||  | ||||||||||||    
T  3284089 ttgttagaacaacaatactaacataagattaaataaaagaccgaaagtaaaagacaatgaacatacgatatttgttaa 3284166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 24574 - 24407
Alignment:
Q  70 caactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaacgtagtttgaccaattgtgcctatacctctacg 169  Q
    ||||| |||||| |||||||||||||||||| ||||  ||||||||||||  || ||| || ||||| ||  || | |||||| ||||||  ||||| ||    
T  24574 caactggtaacagaagattaaataagagaacaaaagtaaaagacaatgaaaacacgatctt-gttaaagttattcggccaattatgccta--cctctgcg 24478  T
Q  170 acaatagagcaactatagttccgtttctattactgtactgattagaatcagggtttcagtgttacaagcaatat 243  Q
    || |||||||| || ||||||||||||||||||   | |||| ||| | || ||||| ||||||||||||||||    
T  24477 actatagagcagctgtagttccgtttctattac---agtgataagacttagagtttcggtgttacaagcaatat 24407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 15077104 - 15077155
Alignment:
Q  69 acaactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaac 120  Q
    |||||||||||||| ||||||||||||||||||||||  ||| |||||||||    
T  15077104 acaactagtaacaacagattaaataagagaacgaaagtaaaaaacaatgaac 15077155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 43611 - 43677
Alignment:
Q  70 caactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaacgcatgatatttgttaa 136  Q
    |||||||||  ||| |||||||||||||||| ||||||||||| ||| ||| ||| |||||||||||    
T  43611 caactagtataaaatgattaaataagagaacaaaagagaaagataataaacacataatatttgttaa 43677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 43790 - 43870
Alignment:
Q  256 tactacgattcagtttacaatattactcctgaaccgtaccttgccttcttccgtgtcttgtatatatgagccatacttcaac 337  Q
    |||||| ||||| |||||| |||||| ||| |||||| |||||||||||||  | |||| |||||||||| |||| ||||||    
T  43790 tactacaattcaatttaca-tattacccctaaaccgtcccttgccttcttcaatatcttctatatatgagtcatatttcaac 43870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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