View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-20 (Length: 71)
Name: NF1556-Insertion-20
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-20 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0864 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-21
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 5331653 - 5331591
Alignment:
| Q |
8 |
caaagttggcagagaggctcttcgtcaggcagctaacataaaagggtttgaaatactcaagtca |
71 |
Q |
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| T |
5331653 |
caaagttgg-agagaggctcttcgtcatgcagctaacataaaagggtttgaaatactcaagtca |
5331591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 5264125 - 5264080
Alignment:
| Q |
8 |
caaagttggcagagaggctcttcgtcaggcagctaacataaaagggt |
54 |
Q |
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| T |
5264125 |
caaagttgg-agagaggctcttcgtcaggcagctagcataaaagggt |
5264080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 34; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 4695 - 4748
Alignment:
| Q |
18 |
agagaggctcttcgtcaggcagctaacataaaagggtttgaaatactcaagtca |
71 |
Q |
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| T |
4695 |
agagaggatcttcgtcaggcagctagcattgcagggtttgaaatactcaagtca |
4748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 22588919 - 22588868
Alignment:
| Q |
20 |
agaggctcttcgtcaggcagctaacataaaagggtttgaaatactcaagtca |
71 |
Q |
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| T |
22588919 |
agaggctcttcgtcaggtagctagcattgcagggtttgaaatactcaagtca |
22588868 |
T |
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