View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1556-Insertion-24 (Length: 192)
Name: NF1556-Insertion-24
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-24 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 2329909 - 2329778
Alignment:
| Q |
8 |
gatattaagattgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatg |
107 |
Q |
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| T |
2329909 |
gatattaagattgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatg |
2329810 |
T |
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| Q |
108 |
attggtatatgtggtggaccaggggggagggt |
139 |
Q |
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| T |
2329809 |
attggtatatgtggtggaccaggggggagggt |
2329778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 2326194 - 2326078
Alignment:
| Q |
8 |
gatattaagattgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatg |
107 |
Q |
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| T |
2326194 |
gatattaagattgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttgtgatg |
2326095 |
T |
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| Q |
108 |
attggtatatgtggtgg |
124 |
Q |
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| T |
2326094 |
atggggatgtgtggtgg |
2326078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 2293009 - 2292919
Alignment:
| Q |
19 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgat |
109 |
Q |
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| T |
2293009 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgat |
2292919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 2309340 - 2309250
Alignment:
| Q |
19 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgat |
109 |
Q |
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| T |
2309340 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgat |
2309250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 2320329 - 2320239
Alignment:
| Q |
19 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgat |
109 |
Q |
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| T |
2320329 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgat |
2320239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 2302628 - 2302512
Alignment:
| Q |
19 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgattggtatatg |
118 |
Q |
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| T |
2302628 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaggatggttttcggagcaactgaatgtttgtgaggatggggatgtg |
2302529 |
T |
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| Q |
119 |
tggtggaccagggggga |
135 |
Q |
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| T |
2302528 |
tggagggccaggaggga |
2302512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 2350198 - 2350078
Alignment:
| Q |
19 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgattggtatatg |
118 |
Q |
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| T |
2350198 |
tgatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgataatggggatatg |
2350099 |
T |
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| Q |
119 |
tggtggaccaggggggagggt |
139 |
Q |
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| T |
2350098 |
cggtggaccgggagggagggt |
2350078 |
T |
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