View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1556-Insertion-6 (Length: 669)
Name: NF1556-Insertion-6
Description: NF1556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1556-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 28159491 - 28159168
Alignment:
| Q |
8 |
aaaatattataaatggaactcagcttcatttttctgaacaagaatggaacttagcttcttcactgaaatatataaatatttgaaagttttaaatagacca |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
28159491 |
aaaatattataaatggaactcagcttcatttttctgaacaagaatggaactcagcttcttaactgaactatataaatatttgaaagttttaaatagacca |
28159392 |
T |
|
| Q |
108 |
aactaaatatacatggatatgaaaattaacacgtnnnnnnngtgagcaaatatacattgatatgaagattaaattccctcactttgtactacatgacgta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28159391 |
aactaaatatacatggatatgaaaattaacacgtaaaaaaagtgagctaatatacattgatatgaagattaaattccctcactttgtactacatgacata |
28159292 |
T |
|
| Q |
208 |
agtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtcccatatatagacatacttgatagccattgaatctcatctaaatcaat |
307 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28159291 |
agtttcattttgagtaaaagaagtcatgtgatagccattttcaatgctaagtcccatatatagacatacttgatagccattgaatcccatctaaatcaat |
28159192 |
T |
|
| Q |
308 |
acccaaatcagcccacaccataaa |
331 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
28159191 |
acccaaatcagcccacaccataaa |
28159168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 458 - 532
Target Start/End: Complemental strand, 28159030 - 28158956
Alignment:
| Q |
458 |
aatgcgtcgaaactcgttaagacaatcgttagtctaattggctatataagccttaaggtactactagacataaca |
532 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159030 |
aatgcgtcaaaactcgttaagacaaccgttagtctaattggctatataagccttaaggtactactagacataaca |
28158956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 669
Target Start/End: Complemental strand, 28158896 - 28158820
Alignment:
| Q |
592 |
gagttccatcaagaattgtgataatgtgtcacttgtnnnnnnngatagactaatgtcacttatgagttctatcatgaa |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
28158896 |
gagttccatcaagaattgtgataatgtgtcacttg-aaaaaaagatagactaatgtcacttatgagttctatcatgaa |
28158820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 28159098 - 28159057
Alignment:
| Q |
402 |
caaaatcacccacaacgagctggtaataacacaactcctaaa |
443 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
28159098 |
caaaaacacccacaacgagctggtaataacacaactcctaaa |
28159057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 14358898 - 14359224
Alignment:
| Q |
8 |
aaaatattataaatggaactcagcttcatttttctgaacaagaatggaacttagcttcttcactgaaatatataaatatttgaaagttttaaatagacca |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14358898 |
aaaatattataaatggaactcggcttcatttttctgaacaagaatggaactcagcttcttaactgaaatatataaatatttgaaagttttaaatagacca |
14358997 |
T |
|
| Q |
108 |
aactaaatatacatggatatgaaaattaacacgtnnnnnnngtgagcaaatatacattgatatgaagattaaattccctcactttgtactacatgacgta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14358998 |
aactaaatatacatggatatgaaaattaacaagtaaaaaaagtgagcaaatatacattgatatgaagattaaattccctcaatttgtactacatgacgta |
14359097 |
T |
|
| Q |
208 |
agtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtcccatatatagacatacttgatagccattgaatctcatctaaatcaat |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14359098 |
agttttattttgagtaaaagaagccatgtgatagccattttcaatgctaagtccaatatatagacatacttgatagccattgaatcccatctaaatcaat |
14359197 |
T |
|
| Q |
308 |
acccaaatcagcccacaccataaaaca |
334 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14359198 |
acccaaatcagcccacaccataaaaca |
14359224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 14359425 - 14359501
Alignment:
| Q |
592 |
gagttccatcaagaattgtgataatgtgtcacttgtnnnnnnngatagactaatgtcacttatgagttctatcatgaa |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |
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|
| T |
14359425 |
gagttccatcaagaattgtgataatgtgtcacttgt-aaaaaagagagactaatgtcacttatgagttctatcctgaa |
14359501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 14359329 - 14359370
Alignment:
| Q |
491 |
ctaattggctatataagccttaaggtactactagacataaca |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14359329 |
ctaattggctatataagccttaaggtactactagacataaca |
14359370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 14359292 - 14359332
Alignment:
| Q |
402 |
caaaatcacccacaacgagctggtaataacacaactcctaa |
442 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||| |
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| T |
14359292 |
caaaaacacccacaacaagctggtaataacacaactcctaa |
14359332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 4e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 181 - 335
Target Start/End: Original strand, 6162977 - 6163131
Alignment:
| Q |
181 |
ttccctcactttgtactacatgacgtaagtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtcccatatatagacatacttga |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
6162977 |
ttccctcactttgtactacatgacgtaagtttcattttgagtaaaagaagccatgtgatagccattttcaatgctaagtcccacatatagacatacttga |
6163076 |
T |
|
| Q |
281 |
tagccattgaatctcatctaaatcaatacccaaatcagcccacaccataaaacag |
335 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163077 |
tagccattgaatcccatctaaatcaatacccaaatcagcccacaccataaaacag |
6163131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 402 - 532
Target Start/End: Original strand, 6163199 - 6163328
Alignment:
| Q |
402 |
caaaatcacccacaacgagctggtaataacacaactcctaaa-ctggnnnnnnnnncaatgcgtcgaaactcgttaagacaatcgttagtctaattggct |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
6163199 |
caaaaacacccacaacgagctggtaataacacaactcctaaaactg---aaaaaaacaatgcgtcgaaactcgttaaaacaaccgttagtctaattggct |
6163295 |
T |
|
| Q |
501 |
atat-aagccttaaggtactactagacataaca |
532 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
6163296 |
atataaagccttaaggtactactagacataaca |
6163328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 593 - 669
Target Start/End: Original strand, 6163389 - 6163464
Alignment:
| Q |
593 |
agttccatcaagaattgtgataatgtgtcacttgtnnnnnnngatagactaatgtcacttatgagttctatcatgaa |
669 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6163389 |
agttccattaagaattgtgataatgtgtcacttgtaaaaaa-gatagactaatgtcacttatgagttctatcatgaa |
6163464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 457 - 532
Target Start/End: Original strand, 4839831 - 4839906
Alignment:
| Q |
457 |
caatgcgtcgaaactcgttaagacaatcgttagtctaattggctatataagccttaaggtactactagacataaca |
532 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4839831 |
caatgcgtcgaaactcgttaagacaaccgttagtctaattggctatataagccttaaggtactattagacataaca |
4839906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 669
Target Start/End: Original strand, 4839966 - 4840042
Alignment:
| Q |
592 |
gagttccatcaagaattgtgataatgtgtcacttgtnnnnnnngatagactaatgtcacttatgagttctatcatgaa |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4839966 |
gagttccatcaagaattgtgataatgtgtcacttg-aaaaaaagatagactaatgtcacttatgagttctatcatgaa |
4840042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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