View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15561_high_3 (Length: 247)
Name: NF15561_high_3
Description: NF15561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15561_high_3 |
 | |
|
| [»] scaffold1175 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 35137347 - 35137118
Alignment:
| Q |
6 |
aatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctattgaatgagtagactatgctatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35137347 |
aatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctattgaatgagtagactatgctatt |
35137248 |
T |
|
| Q |
106 |
tatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatgtgagacacaacatggatgtatgagtacaaaaagtaacttgtttaatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35137247 |
tatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatgtgagacacaacatggatgtatgagtacaaaaagtaacttgtttaatg |
35137148 |
T |
|
| Q |
206 |
ttgtaattttatttcttgatttaaaatatt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35137147 |
ttgtaattttatttcttgatttaaaatatt |
35137118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 35130131 - 35129906
Alignment:
| Q |
6 |
aatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctattgaatgagtag---actatgct |
102 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
35130131 |
aatcagaaaacttgacgaggaggagattgaaaagtggaacaacgtcattttgactagaaataataggttggcgcctattgaatgagtagagtactatgct |
35130032 |
T |
|
| Q |
103 |
atttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgc---atgatgtgagacacaacatggatgtatgagtacaaaaagtaacttgt |
199 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
35130031 |
attt------atgggaaaaaacatgttcaaacaattcagcagagttgtgcatgatgatgtgagacacaacatggatgtatga----caaatgtaacttgt |
35129942 |
T |
|
| Q |
200 |
ttaatgttgtaattttatttcttgatttaaaatatt |
235 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
35129941 |
ttaatgttgtaattttatttctttatttacaatatt |
35129906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 335 - 381
Alignment:
| Q |
187 |
aaaagtaacttgtttaatgttgtaattttatttcttgatttaaaata |
233 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
335 |
aaaagaaacttgtttattgttgtaattttatttcttgatttaaaata |
381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 14276617 - 14276571
Alignment:
| Q |
187 |
aaaagtaacttgtttaatgttgtaattttatttcttgatttaaaata |
233 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14276617 |
aaaagcaacttgtttattgttgtaattttatttcttgatttaaaata |
14276571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University