View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15561_low_1 (Length: 718)
Name: NF15561_low_1
Description: NF15561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15561_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 664; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 18 - 712
Target Start/End: Original strand, 34985784 - 34986483
Alignment:
| Q |
18 |
gttgagagaatgattcagtaaataaatttaaaaagaccatcactctatcaaagtgcagcccaaccttcattgccatagcctctgccgtttacaggagttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985784 |
gttgagagaatgattcagtaaataaatttaaaaagaccatcaccctatcaaagtgcagcccaaccttcattgccatagcctctgccgtttacaggagttc |
34985883 |
T |
|
| Q |
118 |
gcctcaacaactactccgccagcatcacaaattaatgcagacagtccccaactcccatccccagctgggcctggagcatcaatattcagtttaaaccagc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985884 |
gcctcaacaactactccgccagcatcacaaattaatgcagacagtccccaactcccatccccagctgggcctggagcatcaatattcagtttaaaccagc |
34985983 |
T |
|
| Q |
218 |
ttggtgatggtggagtcgaacgcacattagaagttagg-----aactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985984 |
ttggtgatggtggagtcgaacgcacattagaagttaggataggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagt |
34986083 |
T |
|
| Q |
313 |
ttgcaatggaattatgtgctcagaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtca |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986084 |
ttgcaatggaattatgtgctcagaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtca |
34986183 |
T |
|
| Q |
413 |
catgctccggttcattgacaatccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaac |
512 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986184 |
catgctccggttcattgacaatccacttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaac |
34986283 |
T |
|
| Q |
513 |
cgcaagcctaatcaatcgtacatgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaata |
612 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986284 |
cgcaagcctaatcaatcgtacatgacacgccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaata |
34986383 |
T |
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| Q |
613 |
actatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttgtagtatttctctgctgc |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34986384 |
actatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttgtagtatttctctgctgc |
34986483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 702
Target Start/End: Original strand, 34992608 - 34993289
Alignment:
| Q |
18 |
gttgagagaatgattcagtaaataaatttaaaaagaccatcactctatcaaagtgcagcccaaccttcattgccatagcctctgccgtttacaggagttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992608 |
gttgagagaatgattcagtaaataaatttaaaaagaccatcaccctatcaaagtgcagcccaaccttcattgccatagcctctgccgtttacaggagttc |
34992707 |
T |
|
| Q |
118 |
gcctcaacaactactccgccagcatcacaaattaatgcagacagtccccaactcccatccccagctgggcctggagcatcaatattcagtttaaaccagc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34992708 |
gcctcaacaactactccgccagcatcacaaattaatgcagacagtccccaactcccatccccagctgggcctggagcatcaatattcagtttaaaccagc |
34992807 |
T |
|
| Q |
218 |
ttggtgatggtggagtcgaacgcacattagaagttaggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgca |
317 |
Q |
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| T |
34992808 |
ttggtgatggtggagtcgaacgcacattagaagttaggaactggaatgcctacaatttggctctgcagaatcagagcacttaaattgccttcagtttgca |
34992907 |
T |
|
| Q |
318 |
atggaattatgtgctcagaacaccatatcagccgcatcaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34992908 |
atggaattatgtgctcagaacaccatatcagccgcaccaggaatatcatatccttcaaagcatctcttgttcctattataggactgatttagtcacatgc |
34993007 |
T |
|
| Q |
418 |
tccggttcattgacaatccgcttgttcaaagagaaaacattaagagaagaagcaaaccacacccttcacatccagttacaatccataaaatcaaccgcaa |
517 |
Q |
| |
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||||||||||||||||| | ||||||||| ||| |||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||| ||||| | |
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| T |
34993008 |
tccggttcattgacaat-cacttgttcaatgagcaaacattaagagaagaagcagaccacacccttctcgtccggttacaatccataaaattaaccggga |
34993106 |
T |
|
| Q |
518 |
gcctaatcaatcgtacatgacacaccatataagctgaacatgacgtgatattggtcttgagattccaaagtttggatcatatattctatttaataactat |
617 |
Q |
| |
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| ||||||||| ||||| || || ||| ||||| ||||||| |||||| | ||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
34993107 |
gtctaatcaattgtacaagatacgccacataaggtgaacataacgtgaga-tggtcttgagattccaaagtttggaccatatgttctatttaat-actat |
34993204 |
T |
|
| Q |
618 |
gagttacacatagtttttgtccttgtaaaatcagcatgagttttaatctatgatcctagctctttagcttccactttgtagtatt |
702 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
34993205 |
gagttgcacatagtttttgtccttgtaaaatcagcatgagttttaatctatggtcctagctctttagcatccactttgtagtatt |
34993289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 219 - 353
Target Start/End: Original strand, 34978240 - 34978373
Alignment:
| Q |
219 |
tggtgatggtggagtcgaacgcacattagaagttaggaactggaatgcctacaatttggctctgcagaatctgagcacttaaattgccttcagtttgcaa |
318 |
Q |
| |
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|||||| |||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34978240 |
tggtgacggtggagttcagcgcacattaga-gttgggaactggaatgcctacaatttggctctgcagaatcagagcacttaaattgccttcagtttgcaa |
34978338 |
T |
|
| Q |
319 |
tggaattatgtgctcagaacaccatatcagccgca |
353 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
34978339 |
tggaattatgcgctcagaacaccatatcagccgca |
34978373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 611 - 663
Target Start/End: Original strand, 34986511 - 34986563
Alignment:
| Q |
611 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagttttaa |
663 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34986511 |
taactatgagttacacatagtttttgtccttgtaaaatcagcatgagatttaa |
34986563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 633 - 695
Target Start/End: Original strand, 19326104 - 19326167
Alignment:
| Q |
633 |
tttgtccttgtaaaa-tcagcatgagttttaatctatgatcctagctctttagcttccactttg |
695 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
19326104 |
tttgtccttgtaaaaatcaccatgagttttaatctatagtcctagctctttagcttcctctttg |
19326167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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