View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15561_low_2 (Length: 597)
Name: NF15561_low_2
Description: NF15561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15561_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 43315098 - 43315679
Alignment:
| Q |
1 |
aatattatgaatgaagtctaaggtttgatatttgctgctacaaagacatggttcataataaaacttgatccatgttgcttacttgatttccaaagccaat |
100 |
Q |
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| T |
43315098 |
aatattatgaatgaagtctaaggtttgatatttgctgctacaaagacatggttcataataaaacttgatccatgttgcttacttgatttccaaagccaat |
43315197 |
T |
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| Q |
101 |
gcctccaccaaggaagactctaccaatgattagagtaggaatgttctgtgccgctgcattgagaattgctccaataagaaagctaagggctcctactatg |
200 |
Q |
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| T |
43315198 |
gcctccaccaaggaagactctaccaatgattagagttggaatgttctgtgccgctgcattgagaattgctccaataagaaagctaagggctcctactatg |
43315297 |
T |
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| Q |
201 |
atagtggcctttctccccttgtttcttgttaggtaggaagcnnnnnnngtcataacaagtgctgagaaataaagagatgatgtaaaaagtgtcagcactt |
300 |
Q |
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| T |
43315298 |
atagtggcctttctccccttgtttcttgttaggtaggaagcaaaaaaagtcataacaagtgctgagaaataaagagatgatgtaaaaagtgtcagcactt |
43315397 |
T |
|
| Q |
301 |
ggttgtcatatttacaatagtcagtttctttcagatgtgcgtgcttctttctgtacacgtccgggaagaatttctctaagaaatcatccattgaagtcac |
400 |
Q |
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| T |
43315398 |
ggttgtcatatttacaatagtcagtttctttcagatgtgcgtgcttctttctgtacacgtccgggaagaatttctctaagaaatcatccattgaagtcac |
43315497 |
T |
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| Q |
401 |
cccacctgacaaaataccgagtaaatttctggtgattttttacatcaatatcaatatgaacatgaataattgaatatcattactgaattaagttagccat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43315498 |
cccacctgacaaaataccgagtaaatttctggtgattttttacatcaatatcaatatgaacatgaataattgaatatcattactgaattaagttagccat |
43315597 |
T |
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| Q |
501 |
aagcaataaataaccttatactgtaagtccactgctacattagaaaattacattaaaatttcacatattctgttgaatattt |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43315598 |
aagcaataaataaccttatactgtaagtccactgctacattagaaaattacattaaaatttcacatattctgttgaagattt |
43315679 |
T |
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