View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15561_low_3 (Length: 424)

Name: NF15561_low_3
Description: NF15561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15561_low_3
NF15561_low_3
[»] chr4 (24 HSPs)
chr4 (10-404)||(2244075-2244483)
chr4 (284-351)||(27043744-27043811)
chr4 (365-404)||(55414427-55414466)
chr4 (282-364)||(21731568-21731650)
chr4 (295-348)||(40174649-40174702)
chr4 (283-404)||(8704985-8705098)
chr4 (290-350)||(15173223-15173283)
chr4 (289-361)||(24169342-24169414)
chr4 (365-405)||(25904230-25904270)
chr4 (366-401)||(13126584-13126619)
chr4 (365-404)||(17822872-17822911)
chr4 (288-351)||(25571348-25571411)
chr4 (365-404)||(54426067-54426106)
chr4 (282-328)||(26590636-26590682)
chr4 (283-364)||(13126489-13126570)
chr4 (296-329)||(22523791-22523824)
chr4 (286-351)||(52315113-52315178)
chr4 (371-404)||(55064859-55064892)
chr4 (288-345)||(55437171-55437228)
chr4 (308-364)||(1706698-1706754)
chr4 (289-321)||(31851568-31851600)
chr4 (284-364)||(35571545-35571625)
chr4 (284-328)||(37636100-37636144)
chr4 (312-348)||(44797972-44798008)
[»] chr2 (25 HSPs)
chr2 (291-398)||(42419836-42419942)
chr2 (365-404)||(12289821-12289860)
chr2 (365-404)||(26202052-26202091)
chr2 (289-351)||(30331840-30331902)
chr2 (288-356)||(15305758-15305826)
chr2 (292-364)||(31561664-31561736)
chr2 (368-404)||(33319822-33319858)
chr2 (289-364)||(2416389-2416464)
chr2 (365-404)||(12194976-12195015)
chr2 (365-404)||(15305698-15305737)
chr2 (288-351)||(27317468-27317531)
chr2 (365-404)||(32592610-32592649)
chr2 (365-404)||(43279536-43279575)
chr2 (285-351)||(2142743-2142809)
chr2 (366-404)||(18066152-18066190)
chr2 (364-402)||(43511111-43511149)
chr2 (289-354)||(3312163-3312228)
chr2 (371-404)||(42868479-42868512)
chr2 (364-404)||(7928305-7928345)
chr2 (312-344)||(18066224-18066256)
chr2 (308-364)||(19608571-19608627)
chr2 (365-401)||(20926530-20926566)
chr2 (312-364)||(31744374-31744426)
chr2 (312-364)||(42659153-42659205)
chr2 (365-401)||(45229538-45229574)
[»] chr3 (19 HSPs)
chr3 (286-345)||(25447161-25447220)
chr3 (365-404)||(39980753-39980792)
chr3 (365-404)||(46478713-46478752)
chr3 (367-404)||(901948-901985)
chr3 (291-368)||(18405752-18405829)
chr3 (288-404)||(47132355-47132468)
chr3 (288-364)||(9832673-9832749)
chr3 (284-328)||(30657398-30657442)
chr3 (365-404)||(20880500-20880539)
chr3 (365-404)||(30443917-30443956)
chr3 (291-333)||(26911698-26911740)
chr3 (282-351)||(42799878-42799948)
chr3 (365-403)||(53789468-53789506)
chr3 (369-402)||(26990502-26990535)
chr3 (368-404)||(3845572-3845608)
chr3 (365-401)||(20170550-20170586)
chr3 (364-404)||(21367691-21367731)
chr3 (292-332)||(33405114-33405154)
chr3 (368-404)||(35696262-35696298)
[»] chr7 (18 HSPs)
chr7 (284-354)||(33266400-33266470)
chr7 (288-396)||(18962501-18962610)
chr7 (291-354)||(9210907-9210970)
chr7 (291-351)||(18765373-18765433)
chr7 (288-364)||(19302481-19302557)
chr7 (365-400)||(3928017-3928052)
chr7 (365-404)||(11619165-11619204)
chr7 (289-364)||(35056751-35056826)
chr7 (365-404)||(38499920-38499959)
chr7 (365-399)||(38138486-38138520)
chr7 (367-404)||(39279986-39280023)
chr7 (365-404)||(23989531-23989571)
chr7 (288-364)||(36517653-36517729)
chr7 (285-329)||(41040276-41040320)
chr7 (288-332)||(44822066-44822110)
chr7 (291-351)||(45338542-45338602)
chr7 (288-363)||(45593605-45593681)
chr7 (312-392)||(46407281-46407361)
[»] chr8 (13 HSPs)
chr8 (282-351)||(38602416-38602485)
chr8 (284-369)||(922320-922406)
chr8 (291-365)||(12496993-12497067)
chr8 (284-364)||(36963268-36963348)
chr8 (368-404)||(43045735-43045771)
chr8 (365-404)||(18133680-18133719)
chr8 (288-351)||(30251372-30251435)
chr8 (365-404)||(35643995-35644034)
chr8 (312-362)||(1058019-1058069)
chr8 (312-350)||(38648441-38648479)
chr8 (368-402)||(42893500-42893534)
chr8 (288-364)||(15180616-15180691)
chr8 (364-404)||(21653105-21653145)
[»] chr5 (14 HSPs)
chr5 (282-364)||(32941545-32941628)
chr5 (282-364)||(10640029-10640111)
chr5 (288-354)||(32942680-32942746)
chr5 (290-351)||(9107179-9107240)
chr5 (364-404)||(4014430-4014470)
chr5 (365-404)||(16937890-16937929)
chr5 (288-351)||(32010034-32010097)
chr5 (369-403)||(35446080-35446114)
chr5 (364-404)||(7984993-7985033)
chr5 (365-405)||(10639976-10640016)
chr5 (364-404)||(34160755-34160795)
chr5 (308-364)||(35445782-35445838)
chr5 (364-404)||(39105488-39105528)
chr5 (364-404)||(40848769-40848809)
[»] chr1 (30 HSPs)
chr1 (365-404)||(473188-473227)
chr1 (289-405)||(6292516-6292643)
chr1 (290-364)||(24334271-24334345)
chr1 (286-351)||(33204310-33204375)
chr1 (290-351)||(39976130-39976191)
chr1 (308-364)||(38001671-38001727)
chr1 (284-348)||(41162964-41163028)
chr1 (368-404)||(41195203-41195239)
chr1 (365-404)||(1510317-1510356)
chr1 (365-404)||(24915058-24915097)
chr1 (365-400)||(29904779-29904814)
chr1 (308-351)||(36514614-36514657)
chr1 (365-404)||(37473427-37473466)
chr1 (289-364)||(37617384-37617459)
chr1 (365-404)||(37631566-37631605)
chr1 (365-404)||(51929546-51929585)
chr1 (286-364)||(7941682-7941760)
chr1 (288-400)||(11893226-11893334)
chr1 (289-351)||(50644174-50644236)
chr1 (367-404)||(2294935-2294972)
chr1 (312-364)||(2295172-2295224)
chr1 (364-400)||(10280677-10280713)
chr1 (364-404)||(27820343-27820383)
chr1 (365-405)||(27970301-27970341)
chr1 (364-404)||(31517746-31517786)
chr1 (367-403)||(35179164-35179200)
chr1 (364-404)||(38503471-38503511)
chr1 (368-404)||(43230780-43230816)
chr1 (365-401)||(49938774-49938810)
chr1 (364-404)||(51695501-51695541)
[»] chr6 (7 HSPs)
chr6 (289-404)||(6536639-6536763)
chr6 (364-406)||(9109257-9109299)
chr6 (366-404)||(34430469-34430507)
chr6 (364-404)||(9912197-9912237)
chr6 (364-404)||(20368186-20368226)
chr6 (284-332)||(21405068-21405116)
chr6 (364-404)||(31624114-31624154)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 2244483 - 2244075
Alignment:
Q  10 cttaggaggcatattgagaaaagaattcagaacctgaaatttgtcactcaccactgagttgaaaaaacaaatcaactccgcagctttccctttaccgtcg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  2244483 cttaggaggcatattgagaaaagaattcagaacctgaaatttgtcactcactactgagttgaaaaaacaaatcaactccgtagctttccctttaccgtcg 2244384  T
Q  110 agtgaatcagtgcaactcggcgttctccacagctaggaattgagcgtgaaggattgtgcagtcagtaaatgaaacctagcaattctcaaatgaaaataaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244383 agtgaatcagtgcaactcggcgttctccacagctaggaattgagcgtgaaggattgtgcagtcagtaaatgaaacctagcaattctcaaatgaaaataaa 2244284  T
Q  210 aattagtaatttagtaacataatgctacctagaatcaaaagattaagccaaaagaatcctct--ctctgctacaatgggtctgtttggattgatttatcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  2244283 aattagtaatttagtaacataatgctacctagaatcaaaagattaagccaaaagaatcctctctctctgctacaatgggtctgtttggattgatttatcc 2244184  T
Q  308 gagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag------------ttcataagcttttttcaccttattttcataa 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||||||||    
T  2244183 gagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagcttatgacaatattcataaacttttttcaccttattttcataa 2244084  T
Q  396 gttctccaa 404  Q
    |||||||||    
T  2244083 gttctccaa 2244075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 27043744 - 27043811
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||||||||| ||||  ||| ||||||||||||||||||||| ||||||||||||| ||||    
T  27043744 gggtctgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaa 27043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 55414427 - 55414466
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  55414427 ttcataagcttttttcaacttattttcataagttctccaa 55414466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 21731568 - 21731650
Alignment:
Q  282 atgggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||| |||||||||||| |||||  |||  |||||||||||||||||||| ||| | |||||||||||| || | |||||||    
T  21731568 atgggcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaacttatgaaaacag 21731650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 40174702 - 40174649
Alignment:
Q  295 gattgatttatccgagtttatctactgacataagttttttgaaactgtttggga 348  Q
    |||||||||||  ||||||||||||| ||||||||||| ||| |||||||||||    
T  40174702 gattgatttatttgagtttatctactaacataagttttgtgagactgtttggga 40174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 8705098 - 8704985
Alignment:
Q  283 tgggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttcataagcttttttcac 382  Q
    |||| ||||||||||||  | ||  ||| ||||||| ||||||||||||| ||| |||| ||||||||| || ||||||||||        ||||||||     
T  8705098 tgggactgtttggattggctcatttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaaacagt--------ttttttcag 8705007  T
Q  383 cttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||    
T  8705006 cttattttcataagttccccaa 8704985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 15173223 - 15173283
Alignment:
Q  290 gtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggaga 350  Q
    ||||||||||| ||||  ||  ||||||||||||||||||||| ||| |||||||||||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggaga 15173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 24169414 - 24169342
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaa 361  Q
    |||||||||||  ||||  |||||||||||||| |||||||||| ||| ||| |||| ||||| |||||||||    
T  24169414 tgtttggattggcttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaa 24169342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 25904230 - 25904270
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaaa 405  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  25904230 ttcataagcttttttcagcttatttttataagttctccaaa 25904270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 401
Target Start/End: Original strand, 13126584 - 13126619
Alignment:
Q  366 tcataagcttttttcaccttattttcataagttctc 401  Q
    |||||||||||||||| |||||||||||||||||||    
T  13126584 tcataagcttttttcagcttattttcataagttctc 13126619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 17822872 - 17822911
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  17822872 ttcataagctttttttagcttattttcataagttctccaa 17822911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 25571411 - 25571348
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||||  ||||  |||||||||||||||||||||||   ||||||||||| ||||||    
T  25571411 ctgtttggattggcttatttgagtttatctactgacataagttacatgaaactgtttaggagaa 25571348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 54426106 - 54426067
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  54426106 ttcataagcttttttcaagttattttcataagttctccaa 54426067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 26590682 - 26590636
Alignment:
Q  282 atgggtctgtttggattgatttatccgagtttatctactgacataag 328  Q
    ||||||||||||||||||| ||||  ||||||||||||| |||||||    
T  26590682 atgggtctgtttggattgaattatttgagtttatctacttacataag 26590636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 13126489 - 13126570
Alignment:
Q  283 tgggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||||||||||||||  ||||   || ||| ||||| ||||||||||| ||| ||||||||| |||| || |||||||||    
T  13126489 tgggtctgtttggattggcttattttagcttacctactaacataagttttgtgagactgtttggaagaacttataaaaacag 13126570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 22523824 - 22523791
Alignment:
Q  296 attgatttatccgagtttatctactgacataagt 329  Q
    |||||||||| |||||||||||||||||||||||    
T  22523824 attgatttattcgagtttatctactgacataagt 22523791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 52315113 - 52315178
Alignment:
Q  286 gtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    |||| |||||||||| ||||  |||||||||||||||| |||||||| ||| | ||||||| ||||    
T  52315113 gtctctttggattgacttatttgagtttatctactgacgtaagttttgtgagattgtttggaagaa 52315178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Complemental strand, 55064892 - 55064859
Alignment:
Q  371 agcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| ||||||||||||||||||||||    
T  55064892 agcttttttcatcttattttcataagttctccaa 55064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 55437228 - 55437171
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttg 345  Q
    ||||||||||||  ||||  |||||||||||||| |||||||||| ||||| ||||||    
T  55437228 ctgtttggattggcttatttgagtttatctactgccataagttttgtgaaattgtttg 55437171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 1706754 - 1706698
Alignment:
Q  308 gagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||||||||||||||| ||| || ||||| ||||| || | |||||||    
T  1706754 gagtttatctactgacataagttttgtgagacggtttgagagaaattatgaaaacag 1706698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 31851600 - 31851568
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactg 321  Q
    ||||||||||||||||| |||||||||||||||    
T  31851600 tgtttggattgatttattcgagtttatctactg 31851568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 35571545 - 35571625
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||||||  ||||  ||| |||||||||  |||||||||| ||  |  ||||||||||| ||||||||||||    
T  35571545 gggtctgtttggattggcttatttgagcttatctactagcataagttttgtgggatagtttgggagaacttttaaaaacag 35571625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 37636100 - 37636144
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataag 328  Q
    |||||| |||||||||||||||  ||||||||||||| |||||||    
T  37636100 gggtctatttggattgatttatttgagtttatctactaacataag 37636144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 44798008 - 44797972
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttggga 348  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  44798008 ttatctactgacataagttttgtgagactgtttggga 44797972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 42419942 - 42419836
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttcataagcttttttcaccttatttt 390  Q
    |||||||||| ||||  |||||||||| |||||||||||||||||| |||||||||||||| ||   ||||||| | || | | ||||||| ||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagcttatga-catttttcagcttatttt 42419844  T
Q  391 cataagtt 398  Q
    ||||||||    
T  42419843 cataagtt 42419836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 12289860 - 12289821
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  12289860 ttcataagcttttttcaacttattttcataagttctccaa 12289821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 26202091 - 26202052
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  26202091 ttcataagcttttttcaacttattttcataagttctccaa 26202052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 30331902 - 30331840
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    |||||||||||| ||||   || ||||||||||||||||||||| ||| ||||||||||||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaa 30331840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 15305826 - 15305758
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattttt 356  Q
    ||||||||||||  ||||  ||| ||||||| ||||||||||||| ||||||||||||| |||| ||||    
T  15305826 ctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaactttt 15305758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 31561664 - 31561736
Alignment:
Q  292 ttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||| ||||  ||| ||||||||| ||||||||||| | ||||||||||||| || |||| |||||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaactgtttgggaaaacttttgaaaacag 31561736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 33319822 - 33319858
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33319822 ataagcttttttcagcttattttcataagttctccaa 33319858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 2416464 - 2416389
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||| |||||| ||||  ||||||||||||| ||||||||||| |||||||| |||| |||| || | |||||||    
T  2416464 tgtttagattgacttatttgagtttatctactaacataagttttgtgaaactgcttggaagaacttattaaaacag 2416389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 12195015 - 12194976
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  12195015 ttcataagcttttttcaacttattttcacaagttctccaa 12194976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 15305737 - 15305698
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  15305737 ttcataagtttttttcaacttattttcataagttctccaa 15305698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 27317531 - 27317468
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||||| ||||  ||| |||||||| |||||||||||| ||| |||||||| |||||    
T  27317531 ctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaa 27317468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 32592649 - 32592610
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  32592649 ttcataagcttttctcaacttattttcataagttctccaa 32592610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 43279536 - 43279575
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  43279536 ttcataagcttttttcaacttattttcacaagttctccaa 43279575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 2142809 - 2142743
Alignment:
Q  285 ggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||| |||| ||||  ||||||||||||   |||||||||| ||| ||||||||||||||    
T  2142809 ggtctgtttggtttgacttatttgagtttatctacatgcataagttttatgagactgtttgggagaa 2142743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Complemental strand, 18066190 - 18066152
Alignment:
Q  366 tcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  18066190 tcataagctattttcaccttattttcttaagttctccaa 18066152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 43511149 - 43511111
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctcc 402  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  43511149 gttcataagctgttttcagcttattttcataagttctcc 43511111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 3312228 - 3312163
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattt 354  Q
    |||||||||||  ||||  ||| |||||||||||| |||||||| ||| |||||| ||||||||||    
T  3312228 tgtttggattggcttatttgagcttatctactgacgtaagttttgtgagactgttggggagaattt 3312163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 42868479 - 42868512
Alignment:
Q  371 agcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| ||||||||||||||||||||||    
T  42868479 agcttttttcagcttattttcataagttctccaa 42868512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 7928305 - 7928345
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||| | |||||| ||||||||||||||||||||||    
T  7928305 gttcataagttgttttcagcttattttcataagttctccaa 7928345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 18066256 - 18066224
Alignment:
Q  312 ttatctactgacataagttttttgaaactgttt 344  Q
    ||||||||||||||||||||| |||||||||||    
T  18066256 ttatctactgacataagttttgtgaaactgttt 18066224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 19608571 - 19608627
Alignment:
Q  308 gagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||||||||| ||||| ||| |||||||| ||||| || |||| ||||    
T  19608571 gagtttatctactgacataggttttatgagactgtttgcgagaacttataaacacag 19608627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 20926566 - 20926530
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctc 401  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  20926566 ttcattagcttttttcaacttattttcataagttctc 20926530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 31744426 - 31744374
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||||| |||||||||||| ||| |||||||| ||||| |||| |||||||    
T  31744426 ttatctaccgacataagttttctgagactgtttgagagaacttttgaaaacag 31744374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 42659153 - 42659205
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||| ||||| |||||||||| ||| |||||||||||||| |||| |||||||    
T  42659153 ttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacag 42659205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 45229574 - 45229538
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctc 401  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  45229574 ttcattagcttttttcagcttattttcataagttctc 45229538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 25447161 - 25447220
Alignment:
Q  286 gtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttg 345  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||| ||| ||||||||    
T  25447161 gtctgtttggattgacttatttgagtttatctactgacataagttttgtgagactgtttg 25447220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 39980792 - 39980753
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39980792 ttcataagcttttttcaacttattttcataagttctccaa 39980753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 46478752 - 46478713
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  46478752 ttcataagcttttttcaacttattttcataagttctccaa 46478713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 901985 - 901948
Alignment:
Q  367 cataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  901985 cataagcttttttcaacttattttcataagttctccaa 901948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 18405752 - 18405829
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttca 368  Q
    ||||||||| |||||  ||| ||||||||||||||||||||| ||| ||||||||  |||| || | |||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaacttatgaaaacagttca 18405829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 404
Target Start/End: Complemental strand, 47132468 - 47132355
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttcataagcttttttcaccttat 387  Q
    ||||||||||||  ||||  ||| |||||||||| ||  |||||| ||| ||||||| |||||| || | |||| | || |||||||||||||| |||||    
T  47132468 ctgtttggattggcttatttgagcttatctactggca--agttttgtgagactgttttggagaacttatgaaaa-atttaataagcttttttcaacttat 47132372  T
Q  388 tttcataagttctccaa 404  Q
    |||||||| ||||||||    
T  47132371 tttcataacttctccaa 47132355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 9832673 - 9832749
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||| |||||| ||||  ||| |||| || ||||||||||||| | |||||||||||||||| |||| |||||||    
T  9832673 ctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaacttttgaaaacag 9832749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 30657442 - 30657398
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataag 328  Q
    ||||||||||| ||||||||||  |||||||||||||||||||||    
T  30657442 gggtctgtttgaattgatttatttgagtttatctactgacataag 30657398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 20880539 - 20880500
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  20880539 ttcataagcttttttgagcttattttcataagttctccaa 20880500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 30443956 - 30443917
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  30443956 ttcacaagcttttttcagcttattttcataagttctccaa 30443917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 26911740 - 26911698
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttt 333  Q
    |||||||||| ||||  ||||||||||||||||||||||||||    
T  26911740 tttggattgacttatttgagtttatctactgacataagttttt 26911698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 42799878 - 42799948
Alignment:
Q  282 atgggtctgtttggattgatttatccgag-tttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||| ||||||||||||  ||||  ||| |||||||||||||||| ||||| ||||||| ||||||||||    
T  42799878 atgggcctgtttggattggcttatttgagctttatctactgacatatgttttgtgaaactctttgggagaa 42799948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 53789468 - 53789506
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctcca 403  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  53789468 ttcataagcttttttcagcttaatttcataagttctcca 53789506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 26990502 - 26990535
Alignment:
Q  369 taagcttttttcaccttattttcataagttctcc 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  26990502 taagcttttttcagcttattttcataagttctcc 26990535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 3845572 - 3845608
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctccaa 404  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  3845572 ataatcttttttcagcttattttcataagttctccaa 3845608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 20170586 - 20170550
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctc 401  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  20170586 ttcataagcttttttcaacttattttcattagttctc 20170550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 21367731 - 21367691
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||| ||||| |||||| ||||||||||||||||||||||    
T  21367731 gttcacaagctgttttcagcttattttcataagttctccaa 21367691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 33405114 - 33405154
Alignment:
Q  292 ttggattgatttatccgagtttatctactgacataagtttt 332  Q
    ||||||||| ||||  |||||||||||||||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataagtttt 33405154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 35696298 - 35696262
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| |||||||||| |||||||||||    
T  35696298 ataagcttttttcaacttattttcacaagttctccaa 35696262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 354
Target Start/End: Original strand, 33266400 - 33266470
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattt 354  Q
    |||| |||||||||||| ||||  ||| |||||||| |||||||||||| ||||||| |||||||||||||    
T  33266400 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaactatttgggagaattt 33266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 18962501 - 18962610
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaac-agttcataagcttttttcacctta 386  Q
    ||||||||||||| |||| |||  ||||||||||||||||||||| | | ||||||| |||||| || | ||| | | || |||| || |||||||||||    
T  18962501 ctgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaacttatgaaaccaacttaataatctgttttcacctta 18962600  T
Q  387 ttttcataag 396  Q
    ||||||||||    
T  18962601 ttttcataag 18962610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 9210970 - 9210907
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattt 354  Q
    |||||||||| ||||  ||| ||||||||||| ||||||||| ||| |||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaattt 9210907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 18765433 - 18765373
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||| |||||  ||| ||||||| ||||||||||||| ||| ||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtgagactgtttgggagaa 18765373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 19302481 - 19302557
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||| ||||| ||||  ||| ||||||||||||||||||||| ||| | | ||||||||||||| | |||||||    
T  19302481 ctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacag 19302557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Original strand, 3928017 - 3928052
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttct 400  Q
    ||||||||||||||||| ||||||||||||||||||    
T  3928017 ttcataagcttttttcaacttattttcataagttct 3928052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 11619165 - 11619204
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  11619165 ttcataagcttttttcaacttaatttcataagttctccaa 11619204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 35056826 - 35056751
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||||||||| || || ||| ||||||||| ||||| ||||  | |||||||||||||||| || |||||||||    
T  35056826 tgtttggattgagttttctgagcttatctactaacatacgtttagtaaaactgtttgggagaacttataaaaacag 35056751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 38499920 - 38499959
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  38499920 ttcataagctttttccagcttattttcataagttctccaa 38499959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 399
Target Start/End: Original strand, 38138486 - 38138520
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttc 399  Q
    ||||||||||||||||| |||||||||||||||||    
T  38138486 ttcataagcttttttcaacttattttcataagttc 38138520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 39280023 - 39279986
Alignment:
Q  367 cataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  39280023 cataagcttttttcagcttattttcaaaagttctccaa 39279986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 23989531 - 23989571
Alignment:
Q  365 ttcataagcttttttcacctta-ttttcataagttctccaa 404  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  23989531 ttcataagcttttttcaacttatttttcataagttctccaa 23989571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 36517729 - 36517653
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||| ||||||  ||| ||| |||||| |||||||||| | | |||||||||||||| || | |||||||    
T  36517729 ctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaacttattaaaacag 36517653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 41040320 - 41040276
Alignment:
Q  285 ggtctgtttggattgatttatccgagtttatctactgacataagt 329  Q
    |||||||||| ||||||||||  ||||||||||||||| ||||||    
T  41040320 ggtctgtttgaattgatttatttgagtttatctactgatataagt 41040276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 44822110 - 44822066
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagtttt 332  Q
    ||||||||||||| ||||  |||||||||| ||||||||||||||    
T  44822110 ctgtttggattgacttatttgagtttatctgctgacataagtttt 44822066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 45338602 - 45338542
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    |||||||||  ||||  ||||||||| |||  |||||||||||||| ||||||||||||||    
T  45338602 tttggattggcttatttgagtttatccactagcataagttttttgagactgtttgggagaa 45338542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 45593681 - 45593605
Alignment:
Q  288 ctgtttggattgatttatccgagtttatct-actgacataagttttttgaaactgtttgggagaatttttaaaaaca 363  Q
    ||||||||||||  ||||  |||||||| | ||||||||||| ||| ||| |||||||||||||| || ||||||||    
T  45593681 ctgtttggattggcttatttgagtttatattactgacataagctttgtgagactgtttgggagaacttataaaaaca 45593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 46407361 - 46407281
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttcataagcttttttcaccttattttca 392  Q
    |||||||||| ||||||||||  ||||||  ||||||||| || | ||||||  |||||||||||||| | |||| |||||    
T  46407361 ttatctactgccataagttttgggaaactacttgggagaacttatgaaaacatctcataagcttttttaaacttaatttca 46407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 38602485 - 38602416
Alignment:
Q  282 atgggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||| ||||||||||||| ||||  ||| ||||||||||||||||||||| |||  |||||||||||||    
T  38602485 atgggcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaa 38602416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 922320 - 922406
Alignment:
Q  284 gggtctgtttggatt-gatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttcat 369  Q
    ||||||||||||||| || ||||  |||||||| ||||||| |||||||| ||| ||||||||||| ||||| || |||||| ||||    
T  922320 gggtctgtttggattagacttatttgagtttatatactgacctaagttttgtgatactgtttgggataatttatagaaacagctcat 922406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 12496993 - 12497067
Alignment:
Q  291 tttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagt 365  Q
    |||||||||||||||  ||| |||||| ||| |||||||||| ||| |||||||| ||||| || ||||||||||    
T  12496993 tttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaacttctaaaaacagt 12497067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 36963268 - 36963348
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||||||  ||||  ||| | |||||||| |||||||||| ||| |||||||||||||| ||  ||||||||    
T  36963268 gggtctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaacag 36963348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 43045735 - 43045771
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43045735 ataagcttttttcaacttattttcataagttctccaa 43045771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 18133719 - 18133680
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  18133719 ttcacaagcttttttcagcttattttcataagttctccaa 18133680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 30251372 - 30251435
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||||  ||||  ||| ||||||||||||||||||||  ||| ||||||||||||||    
T  30251372 ctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaa 30251435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 35643995 - 35644034
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  35643995 ttcataagcttttttcaacttattttcataagctctccaa 35644034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 1058019 - 1058069
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttgggagaatttttaaaaac 362  Q
    ||||||||| ||||||||||| ||| |||||||||||||| |||| |||||    
T  1058019 ttatctacttacataagttttgtgagactgtttgggagaacttttgaaaac 1058069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 38648479 - 38648441
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttgggaga 350  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  38648479 ttatctactgacataagttttgtgagactgtttgggaga 38648441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 42893500 - 42893534
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctcc 402  Q
    |||||||||||||| ||||||||||||||||||||    
T  42893500 ataagcttttttcagcttattttcataagttctcc 42893534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 15180691 - 15180616
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||  ||||  |||||||||||||| |||||||||| ||| ||| ||| ||||||||| | |||||||    
T  15180691 ctgtttggattggcttatttgagtttatctactgccataagttttatgagact-ttttggagaatttctgaaaacag 15180616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 21653145 - 21653105
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  21653145 gttcataagctattttcagcttattttcataagctctccaa 21653105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 32941628 - 32941545
Alignment:
Q  282 atgggtctgtttggattgatttatccgag-tttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||||||||| ||||  ||| |||||||||||||||||||| | ||| || ||||||||||| || | |||||||    
T  32941628 atgggtctgtttggattgacttattagagctttatctactgacataagttctgtgagaccgtttgggagaacttatgaaaacag 32941545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 10640111 - 10640029
Alignment:
Q  282 atgggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||| |||||||||||   ||||  ||||||||||||||||||||||||| ||| | |||||||||||| || | |||||||    
T  10640111 atgggcctgtttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacag 10640029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 32942746 - 32942680
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattt 354  Q
    ||||||||||||| |||| |||| || |||||||||||||||||| |   |||||||||||||||||    
T  32942746 ctgtttggattgacttatacgagcttttctactgacataagttttgtttgactgtttgggagaattt 32942680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 9107240 - 9107179
Alignment:
Q  290 gtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||| ||||  ||||||||||| ||||||||||||| ||| | ||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaa 9107179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 4014430 - 4014470
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  4014430 gttcataagctgttttcagcttattttcataagttctccaa 4014470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 16937890 - 16937929
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  16937890 ttcataagcttttttcagcttattttcctaagttctccaa 16937929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 32010097 - 32010034
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||||||||| ||||  ||||||||||||| |||||||||| || | |||||||| |||||    
T  32010097 ctgtttggattgacttatttgagtttatctactcacataagtttcttcagactgtttgagagaa 32010034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 35446114 - 35446080
Alignment:
Q  369 taagcttttttcaccttattttcataagttctcca 403  Q
    ||||||||||||| |||||||||||||||||||||    
T  35446114 taagcttttttcagcttattttcataagttctcca 35446080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 7985033 - 7984993
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| ||||||||||||| ||||||||    
T  7985033 gttcataagctgttttcagcttattttcataaattctccaa 7984993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 10640016 - 10639976
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaaa 405  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  10640016 ttcataagctttttctagcttattttcataagttctccaaa 10639976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 34160795 - 34160755
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||| || |||||| ||||||||||||||||||||||    
T  34160795 gttcataaactgttttcagcttattttcataagttctccaa 34160755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 35445782 - 35445838
Alignment:
Q  308 gagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||||||||||||||||| ||| ||| ||||  ||||||| | |||||||    
T  35445782 gagtttatctactgacataagttttgtgagactctttgacagaatttatgaaaacag 35445838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 39105528 - 39105488
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  39105528 gttcataagctatttttagcttattttcataagttctccaa 39105488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 40848809 - 40848769
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||| | ||||| |||||||||||||||||||||||    
T  40848809 gttcataagttgttttcgccttattttcataagttctccaa 40848769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 473227 - 473188
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  473227 ttcataagcttttttcaacttattttcataagttctccaa 473188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 6292643 - 6292516
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataag-ttttttgaaactgtttgggagaatttttaaaa---------aca-gttcataagctttt 377  Q
    |||||||||||| ||||  ||| |||||||||||||||||   |||||| | |||||||||||||||||||||         ||| ||||||||||| ||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggagaatttttaaaacagcttatgacatgttcataagctgtt 6292544  T
Q  378 ttcaccttattttcataagttctccaaa 405  Q
    |||| |||||||||||||| ||||||||    
T  6292543 ttcagcttattttcataagctctccaaa 6292516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 24334345 - 24334271
Alignment:
Q  290 gtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||||| ||||  ||||||||| || |||||||||||| ||| ||| |||| |||||||| |||||||||    
T  24334345 gtttggattgacttatttgagtttatcaacggacataagttttgtgagactatttgagagaatttataaaaacag 24334271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 33204310 - 33204375
Alignment:
Q  286 gtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    |||||||| ||| || ||||  ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  33204310 gtctgtttagatcgacttatttgagcttatctactgacataagttttgtgagactgtttgggagaa 33204375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 39976130 - 39976191
Alignment:
Q  290 gtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    ||||||| ||| ||||  ||| ||||||||||||||||||||| |||||||||||| |||||    
T  39976130 gtttggactgacttatttgagattatctactgacataagttttgtgaaactgtttgagagaa 39976191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 38001727 - 38001671
Alignment:
Q  308 gagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||| || | |||||||    
T  38001727 gagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacag 38001671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 41162964 - 41163028
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttggga 348  Q
    ||||||||||||||||||||||  ||   |||||| || |||||||||||||| |||||||||||    
T  41162964 gggtctgtttggattgatttattggatcatatctattggcataagttttttgagactgtttggga 41163028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 41195203 - 41195239
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| ||||||||||||||||||||||    
T  41195203 ataagcttttttcagcttattttcataagttctccaa 41195239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 1510317 - 1510356
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  1510317 ttcataagcttttttcaacttattttcgtaagttctccaa 1510356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 24915058 - 24915097
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  24915058 ttcataagcttttttcaacttattttcacaagttctccaa 24915097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 29904814 - 29904779
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttct 400  Q
    |||| |||||||||||||||||||||||||||||||    
T  29904814 ttcaaaagcttttttcaccttattttcataagttct 29904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 351
Target Start/End: Original strand, 36514614 - 36514657
Alignment:
Q  308 gagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    |||||||||||||| |||||||||||||| |||||| |||||||    
T  36514614 gagtttatctactgccataagttttttgagactgttagggagaa 36514657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Complemental strand, 37473466 - 37473427
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  37473466 ttcataagctttttccagcttattttcataagttctccaa 37473427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 37617384 - 37617459
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||||||||| ||||  ||||||||||| || | |||||||| ||| |||||||| |||||||| | |||||||    
T  37617384 tgtttggattgacttatttgagtttatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaaacag 37617459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 37631566 - 37631605
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  37631566 ttcacaagcttttttcagcttattttcataagttctccaa 37631605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 404
Target Start/End: Original strand, 51929546 - 51929585
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  51929546 ttcataagcttttttcaacttatttccataagttctccaa 51929585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 7941760 - 7941682
Alignment:
Q  286 gtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||||||||||| |||||  |||||||||| || || | |||||| ||| ||||||||| ||||||| | |||||||    
T  7941760 gtctgtttggattggtttatttgagtttatctgctaacgtgagttttgtgagactgtttggaagaatttatgaaaacag 7941682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 11893334 - 11893226
Alignment:
Q  288 ctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacagttcataagcttttttcaccttat 387  Q
    ||||||||||||| ||||  ||  |||| ||||||||||| | || ||| |||||| |||||||||  | |||||||  ||||||||||||||| || ||    
T  11893334 ctgtttggattgacttatttga--ttatatactgacataaatattgtgagactgttagggagaattcatgaaaacag--cataagcttttttcagctaat 11893239  T
Q  388 tttcataagttct 400  Q
    |||||| ||||||    
T  11893238 tttcattagttct 11893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 50644174 - 50644236
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaa 351  Q
    |||||||||||| ||||  ||| ||||||||| ||||| ||||| ||| ||||||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaa 50644236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 2294972 - 2294935
Alignment:
Q  367 cataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  2294972 cataagctgttttcaccttattttcgtaagttctccaa 2294935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 2295224 - 2295172
Alignment:
Q  312 ttatctactgacataagttttttgaaactgtttgggagaatttttaaaaacag 364  Q
    |||||||||| |||||||||| ||| |||||||||||||| || | |||||||    
T  2295224 ttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacag 2295172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 10280713 - 10280677
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttct 400  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  10280713 gttcataagcttttgtcagcttattttcataagttct 10280677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 27820343 - 27820383
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| ||||||||||||| ||||||||    
T  27820343 gttcataagctattttcagcttattttcataaattctccaa 27820383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 27970301 - 27970341
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctccaaa 405  Q
    |||||||||||||||||  |||||||||||||||| |||||    
T  27970301 ttcataagcttttttcagtttattttcataagttccccaaa 27970341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 31517746 - 31517786
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  31517746 gttcataagctgttttcagcttattttcataagctctccaa 31517786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 35179200 - 35179164
Alignment:
Q  367 cataagcttttttcaccttattttcataagttctcca 403  Q
    |||||||| |||||| |||||||||||||||||||||    
T  35179200 cataagctgttttcagcttattttcataagttctcca 35179164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 38503471 - 38503511
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||| | |||||| ||||||||||||||||||||||    
T  38503471 gttcataagttgttttcagcttattttcataagttctccaa 38503511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Original strand, 43230780 - 43230816
Alignment:
Q  368 ataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  43230780 ataagcttttttcaacttattttcattagttctccaa 43230816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 49938810 - 49938774
Alignment:
Q  365 ttcataagcttttttcaccttattttcataagttctc 401  Q
    |||| |||||||||||| |||||||||||||||||||    
T  49938810 ttcaaaagcttttttcaacttattttcataagttctc 49938774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 51695501 - 51695541
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| ||||||||||||| ||||||||    
T  51695501 gttcataagctattttcagcttattttcataaattctccaa 51695541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 6536763 - 6536639
Alignment:
Q  289 tgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaatttttaaaa------acag-----ttcataagctttt 377  Q
    |||||||||| | ||||  ||||||| ||||||||||||||||| |||  |||||||||||||||| | |||      ||||     |||||||||||||    
T  6536763 tgtttggattaaattatttgagtttacctactgacataagttttgtga--ctgtttgggagaatttatcaaacagcttacagcaattttcataagctttt 6536666  T
Q  378 ttcaccttattttcataagttctccaa 404  Q
    |||| ||||||||||||| ||||||||    
T  6536665 ttcaacttattttcataaattctccaa 6536639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 9109257 - 9109299
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaaat 406  Q
    ||||||||| | ||||||||||||||||||| |||||||||||    
T  9109257 gttcataagttgttttcaccttattttcataggttctccaaat 9109299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Original strand, 34430469 - 34430507
Alignment:
Q  366 tcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  34430469 tcataagcttttttcagcttattttcataacttctccaa 34430507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 9912197 - 9912237
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  9912197 gttcataagctgttttgagcttattttcataagttctccaa 9912237  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 20368186 - 20368226
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    |||||||||||  ||||| ||||||||||||||||||||||    
T  20368186 gttcataagctagtttcaacttattttcataagttctccaa 20368226  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 21405068 - 21405116
Alignment:
Q  284 gggtctgtttggattgatttatccgagtttatctactgacataagtttt 332  Q
    ||||||||||||||||| ||||  ||| |||| ||||||||||||||||    
T  21405068 gggtctgtttggattgacttatttgagcttatatactgacataagtttt 21405116  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 31624154 - 31624114
Alignment:
Q  364 gttcataagcttttttcaccttattttcataagttctccaa 404  Q
    ||||||||||| |||||| ||||||||||||| ||||||||    
T  31624154 gttcataagctgttttcaacttattttcataatttctccaa 31624114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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