View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15561_low_4 (Length: 338)
Name: NF15561_low_4
Description: NF15561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15561_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 24587143 - 24587316
Alignment:
| Q |
10 |
ataattctattaatatgttgcgaactgcgaattgatacttacattatatactggttcgtagtgcttttacgaattgttttgcataaattttcgttataat |
109 |
Q |
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| T |
24587143 |
ataattctattaatatgttgtgaactgcgaattgatacttacattacatactggttcgtagtgcttttacgaattgttttgcataaattttcgttataat |
24587242 |
T |
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| Q |
110 |
tatttgaaattgtgaaccggcgaatccaattaactgaagatcaaagaaagaggaatgtctcatacaataacacc |
183 |
Q |
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| T |
24587243 |
tatttgaaattgtgaaccggcgaatcaaattaactgaagatcaaagaaagaggaatgtctcataaaataacacc |
24587316 |
T |
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Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 220 - 338
Target Start/End: Original strand, 24587353 - 24587471
Alignment:
| Q |
220 |
gattatgataagtggatactattaggataaattgttcttttattgtcatcggtatcaccaaaacatagaaaaatcgaaagaaagtattgtatgacaaagg |
319 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24587353 |
gattatgataagtggatactataaggataaattgttcttttattgctatcggtatcaccaaaacatagaaaaatcgaaagaaagtattgtatgacaaagg |
24587452 |
T |
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| Q |
320 |
gtagcacttaggtgacata |
338 |
Q |
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| T |
24587453 |
gtagcacttaggtgacata |
24587471 |
T |
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