View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15561_low_5 (Length: 311)
Name: NF15561_low_5
Description: NF15561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15561_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 54142214 - 54141928
Alignment:
| Q |
15 |
acaaaatatgtcaaatgacattccaactcacgataggaaccaggtactacctaaggcataattaaccagtaatctcccacagaaagattccagccggata |
114 |
Q |
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| T |
54142214 |
acaaaatatgtcaaatgacattccaactcacgataggaaccaggtactacctaaggcataattaaccagtaatctcccacagaaagattccagccggata |
54142115 |
T |
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| Q |
115 |
agnnnnnnnncattgaattggagtgaannnnnnnataacactatcatatttagcctaggatccacttctcagcttcagattataaacaatttaatcaaac |
214 |
Q |
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| T |
54142114 |
agaaaaaaa-cattgaattggagtgaatttttttataacactatcatatttagcctaggatccacttctcagcttcagattataaacaatttaatcaaac |
54142016 |
T |
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| Q |
215 |
tttcaagtgtagactttcattatcaactataactcggttttaccaggctcctattatgtgatagttaattatgttacagtagtattat |
302 |
Q |
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| T |
54142015 |
tttcaagtgtagactttcattatcaactataactcggttttaccaggctcctattatgtgatagttaattatgttacagtagtattat |
54141928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 54129041 - 54128904
Alignment:
| Q |
165 |
tagcctaggatccacttctcagcttcagattataaacaatttaatcaaactttcaagtgtagactttcattatcaactataactcggttttaccaggctc |
264 |
Q |
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| T |
54129041 |
tagcctaggatccacttctcagcttcagattataaacaaattaatcatattttcaagtgcaaacttgcattatcaactataactcggttttaccgagctc |
54128942 |
T |
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| Q |
265 |
ctattatgtgatagttaattatgttacagtagtattat |
302 |
Q |
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| T |
54128941 |
ctattatgtgatggttaattatgcttcagtagtgttat |
54128904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 54129137 - 54129101
Alignment:
| Q |
71 |
cataattaaccagtaatctcccacagaaagattccag |
107 |
Q |
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| T |
54129137 |
cataattaaccagtaatctcccacaaaaagattccag |
54129101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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