View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15562_high_1 (Length: 502)

Name: NF15562_high_1
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15562_high_1
NF15562_high_1
[»] chr2 (5 HSPs)
chr2 (320-484)||(8019915-8020079)
chr2 (197-320)||(8019760-8019883)
chr2 (66-183)||(8019528-8019645)
chr2 (321-457)||(22391284-22391420)
chr2 (197-296)||(22391113-22391209)
[»] chr3 (56 HSPs)
chr3 (321-476)||(28132105-28132260)
chr3 (321-476)||(28510616-28510771)
chr3 (321-476)||(28147889-28148044)
chr3 (321-476)||(28183922-28184077)
chr3 (321-476)||(27975507-27975662)
chr3 (321-476)||(28081898-28082053)
chr3 (321-473)||(28002333-28002485)
chr3 (321-476)||(28159358-28159513)
chr3 (321-476)||(28481444-28481599)
chr3 (321-476)||(27918527-27918682)
chr3 (374-476)||(28053683-28053785)
chr3 (374-476)||(28064108-28064210)
chr3 (321-476)||(27460990-27461142)
chr3 (321-476)||(28035583-28035738)
chr3 (321-423)||(17746167-17746269)
chr3 (321-423)||(19047487-19047589)
chr3 (321-476)||(11418886-11419041)
chr3 (321-423)||(27392230-27392332)
chr3 (321-416)||(12146179-12146274)
chr3 (111-180)||(28183439-28183508)
chr3 (37-183)||(17746683-17746838)
chr3 (37-183)||(19048003-19048158)
chr3 (321-421)||(18026466-18026566)
chr3 (321-423)||(27347569-27347671)
chr3 (134-183)||(28081438-28081487)
chr3 (111-183)||(28147234-28147307)
chr3 (321-405)||(26114998-26115082)
chr3 (321-405)||(26142310-26142394)
chr3 (321-405)||(26210106-26210190)
chr3 (321-416)||(27376362-27376457)
chr3 (232-296)||(28081765-28081826)
chr3 (196-295)||(27918358-27918454)
chr3 (321-405)||(26180615-26180699)
chr3 (326-405)||(26237350-26237429)
chr3 (118-183)||(27974226-27974291)
chr3 (226-296)||(18026641-18026708)
chr3 (321-405)||(26131578-26131662)
chr3 (223-296)||(28147744-28147814)
chr3 (224-296)||(28131961-28132030)
chr3 (321-371)||(28481909-28481959)
chr3 (223-296)||(17746344-17746414)
chr3 (223-296)||(19047664-19047734)
chr3 (232-289)||(26180769-26180823)
chr3 (223-296)||(27461214-27461284)
chr3 (223-296)||(27975362-27975432)
chr3 (48-95)||(28001872-28001919)
chr3 (120-167)||(28482365-28482412)
chr3 (120-167)||(28511177-28511224)
chr3 (134-180)||(27918067-27918113)
chr3 (232-287)||(26210262-26210314)
chr3 (232-287)||(26237506-26237558)
chr3 (142-183)||(28053208-28053249)
chr3 (142-183)||(28063633-28063674)
chr3 (226-296)||(11418747-11418814)
chr3 (139-183)||(18026977-18027021)
chr3 (139-183)||(27392719-27392763)
[»] scaffold0257 (2 HSPs)
scaffold0257 (321-476)||(17484-17639)
scaffold0257 (111-163)||(17021-17073)
[»] scaffold0043 (2 HSPs)
scaffold0043 (316-457)||(54687-54828)
scaffold0043 (202-287)||(54907-54989)
[»] chr7 (2 HSPs)
chr7 (321-476)||(8693277-8693432)
chr7 (197-287)||(8693519-8693606)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 5e-88; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 320 - 484
Target Start/End: Original strand, 8019915 - 8020079
Alignment:
Q  320 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019915 catgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtg 8020014  T
Q  420 atgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaactatcc 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020015 atgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaaaactatcc 8020079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 197 - 320
Target Start/End: Original strand, 8019760 - 8019883
Alignment:
Q  197 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019760 taagatgtctacctcacttacttaagatgagaatcaaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 8019859  T
Q  297 aacatgctttccaaagctaggaac 320  Q
    ||||||||||||||||||||||||    
T  8019860 aacatgctttccaaagctaggaac 8019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 8019528 - 8019645
Alignment:
Q  66 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccattcatttattgcagga 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8019528 tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattcttatcatatgcatgtgtttatttcccatttatttattgcagga 8019627  T
Q  166 attgagggggaatgtgga 183  Q
    ||||||| ||||||||||    
T  8019628 attgaggaggaatgtgga 8019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 321 - 457
Target Start/End: Original strand, 22391284 - 22391420
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||  | ||||| ||||||||| |||||||||||||||||||| ||||||  |     
T  22391284 atgtctttccaatctccatatgtaaagagcttcctgagctagaggctctagtgataagtgaagcatataagctagaggaaatatttgtatgtgaagaagg 22391383  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgta 457  Q
    |||||| |||||  | || |||||||| |||||||||    
T  22391384 tgatcagaaagtcaatatgccaaatctaaaagttgta 22391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 22391113 - 22391209
Alignment:
Q  197 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    |||| |||||||| || || ||| | |||||||| |||||||||||||| || ||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  22391113 taaggtgtctaccacagttgcttgatatgagaattgaagaatgcaaagaattgaagcatattattga---agatgatttggagaataaaaaatcctcaaa 22391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 28132105 - 28132260
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  28132105 atgtctttccaatctccgtatgtaaagagcttcctgagctatattatctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtga 28132204  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132205 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 28132260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 321 - 476
Target Start/End: Complemental strand, 28510771 - 28510616
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |  ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28510771 atgtctttccaatctccatatctaaagagcttccagagctaattgttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaaggtga 28510672  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28510671 tgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28510616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 28147889 - 28148044
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| ||||| |||||||||||||||||||||||  |||    
T  28147889 atgtgtttccaatctccatatctaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttga 28147988  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28147989 tgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaa 28148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 28183922 - 28184077
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28183922 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtga 28184021  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||||||||||||||||||||||||  ||  |||| ||||||||||||||||||    
T  28184022 tgatcacaaagtggagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 27975507 - 27975662
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||||||||||||||| ||||||| |   |||  | ||||||||||||  |||||||||||||||||||||||||||||||||    
T  27975507 atgtgtttccaatctccatatgtaaagagcttcttgagctagaggttctcttgataagagaagcagctgagctagaggaaatatttgtaagtgaaggtga 27975606  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27975607 tgatcacaaagtggagattccaaatctgatagttgtaatatttgaaaatctaccaa 27975662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 28081898 - 28082053
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  28081898 atgtctttccaatctccgtatataaagagcttcctgagctaaattatctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtga 28081997  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||||||||||||||||||| ||||   | ||||| ||||||||||||| ||||    
T  28081998 tgatcacaaagtggagattccatatctacgatttgtagtatttgaaaatcttccaa 28082053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 321 - 473
Target Start/End: Original strand, 28002333 - 28002485
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||||    
T  28002333 atgtgtttccaatctccatatgtaaagagcttcctgagctaaatgttctgaccataagagaagcagacgaggtagaggaaatatttggaagtgaaggtga 28002432  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 473  Q
    |||||||||||| |||||||||||||| ||| ||||| |||||||||||||||    
T  28002433 tgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctac 28002485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 28159358 - 28159513
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| || |||||||||||||||||||||||| |||||||||    
T  28159358 atgtatttccaatctccatatgtaaagagcttcctgagctaaatgttctgatgataagagaatcagatgagctagaggaaatatttgtaattgaaggtga 28159457  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||| |||||| |||||||||||||  ||  |||| ||||||||||||||||||    
T  28159458 tgatcagaaagtgaagattccaaatctagaatgtgtagtatttgaaaatctaccaa 28159513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 476
Target Start/End: Complemental strand, 28481599 - 28481444
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||| ||||||||||||  ||||||||  ||| ||||||||||||||| | ||| | ||||||||||||| ||||||||||||    
T  28481599 atgtgtttccaatctccatatctaaagagcttccaaagctaaatgttctcatcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtga 28481500  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  28481499 tgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatctaccaa 28481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 27918527 - 27918682
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||  | |||||||||||| ||||||| || |||||||||| || |||||||||    
T  27918527 atgtctttccaatctccatatgtaaagaccttcctgagctaaagtgtctagtgataagagaagcagatgagctggatgaaatatttgcaaatgaaggtga 27918626  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||| ||||||||||||||||||||  ||  | || ||||||||||||||||||    
T  27918627 tgatcagaaagtggagattccaaatctagaatatctagtatttgaaaatctaccaa 27918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 374 - 476
Target Start/End: Original strand, 28053683 - 28053785
Alignment:
Q  374 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 473  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28053683 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctac 28053782  T
Q  474 caa 476  Q
    |||    
T  28053783 caa 28053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 374 - 476
Target Start/End: Original strand, 28064108 - 28064210
Alignment:
Q  374 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 473  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28064108 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctac 28064207  T
Q  474 caa 476  Q
    |||    
T  28064208 caa 28064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 476
Target Start/End: Complemental strand, 27461142 - 27460990
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||| ||||||||||||||||||||||||||| |   ||| |||||||||||||||   |||||||||||||||||||||||||||   ||    
T  27461142 atgtctttccaatgtccatatgtaaagagcttcctgagctagaggttctaatcataagagaagca---gagctagaggaaatatttgtaagtgaaaaaga 27461046  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||| ||| |||||||||||||||| ||| ||||| |||||| |||||||||||    
T  27461045 tgatcagaaactggagattccaaatctaaaacttgtagtatttgtaaatctaccaa 27460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 28035583 - 28035738
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||||||||||||||||||||  || || |   ||| || |||||||||||| || || | || |||||||||| ||||||||||||    
T  28035583 atgtctttccaatctccatatgtaaagagcttcccaagttagaagctctaatgataagagaagcagataagatggaagaaatatttgcaagtgaaggtga 28035682  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||| |||||||||||||||||||| ||| ||||| | ||||||||||||||||    
T  28035683 tgatcagaaagtggagattccaaatctaaaatttgtagtgtttgaaaatctaccaa 28035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 321 - 423
Target Start/End: Complemental strand, 17746269 - 17746167
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  17746269 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 17746170  T
Q  421 tga 423  Q
    |||    
T  17746169 tga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 321 - 423
Target Start/End: Complemental strand, 19047589 - 19047487
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||||||||||||||||||||||||||| |   ||| || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  19047589 atgtctttccaatctccatatgtaaagagcttcctgagctagagggtctaatgataagagaagcatatgagctagaggaaatatttggaagtgaaggtga 19047490  T
Q  421 tga 423  Q
    |||    
T  19047489 tga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 11418886 - 11419041
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||  |||||| |||||||| ||| |||||||||||||||||||||||||||||| |||    
T  11418886 atgtttttccaatctccctgtgtaaagagcttcctgagctatatgttctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatga 11418985  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    | |||| |||   |||||||| ||||| ||| || || ||||||||||||| ||||    
T  11418986 tcatcagaaaagcgagattccgaatcttaaatttttagtatttgaaaatctgccaa 11419041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 321 - 423
Target Start/End: Complemental strand, 27392332 - 27392230
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||| | |||| |||    
T  27392332 atgtgtttccaatctccatatgtaaagagcttcctgagctaaaggttctgatcataagagaagcagatgagctagaggaaatatttgtatgcgaagttga 27392233  T
Q  421 tga 423  Q
    |||    
T  27392232 tga 27392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 12146179 - 12146274
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 416  Q
    |||| |||||||||||||||||||||||||||||||||||| | | ||| || |||||||||||| ||||||||||||||||||||||| ||||||    
T  12146179 atgtgtttccaatctccatatgtaaagagcttcctgagctacagtttctaattataagagaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 28183439 - 28183508
Alignment:
Q  111 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgt 180  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28183439 actttgttattcttattttatgcatgtgtttatttcccattcatttattgcaggaattgagtgggaatgt 28183508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 17746838 - 17746683
Alignment:
Q  37 agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgt--------acttggttattcttatc 127  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||        |||| |||||||||||     
T  17746838 agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttatt 17746739  T
Q  128 atatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
     |||   |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  17746738 ttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 17746683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 19048158 - 19048003
Alignment:
Q  37 agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgt--------acttggttattcttatc 127  Q
    ||||||||  ||||||||||||| |||||||| |||||||||||||||  |||||||||||   |||||||||||        |||| |||||||||||     
T  19048158 agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttacagactttgttattcttatt 19048059  T
Q  128 atatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
     |||   |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  19048058 ttatatgtgtgtttatttctcattcatttattgcaggaattgagtggggatgtgga 19048003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 321 - 421
Target Start/End: Complemental strand, 18026566 - 18026466
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||||||||||||| |||||||||||||||||||||   | | ||||||  ||||||| |  |||||||||||||||||||| |||||| |||    
T  18026566 atgtctttccaatctccatatataaagagcttcctgagctaaaggttataatcatagtagaagcagagaagctagaggaaatatttgtatgtgaagttga 18026467  T
Q  421 t 421  Q
    |    
T  18026466 t 18026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 423
Target Start/End: Original strand, 27347569 - 27347671
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||||||||||||||||||||||| |   ||| |||||||||||| || | ||  | ||||||||||||||| || |||||||    
T  27347569 atgtgtttccaatctccatatgtaaagagcttcctgagctagaggctctaatcataagagaatcagaagaattggaggaaatatttgtatgtaaaggtga 27347668  T
Q  421 tga 423  Q
    |||    
T  27347669 tga 27347671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 28081438 - 28081487
Alignment:
Q  134 atgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28081438 atgtgtttatttcccattcatttattgcaggaattgagtgggaatgtgga 28081487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 28147234 - 28147307
Alignment:
Q  111 acttggttattcttatcatatgcat-gtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    |||| |||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  28147234 actttgttattcttattttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtgga 28147307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 26115082 - 26114998
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 405  Q
    ||||||||||| ||||||| |||||||||||||||||||||||   | |||| |||||||||||| ||||| |||| ||||||||    
T  26115082 atgtctttccagtctccatttgtaaagagcttcctgagctaaaggttatgataataagagaagcaaatgagttagaagaaatatt 26114998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 26142394 - 26142310
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 405  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||   | || | |||||||||||| |||||||||||||||||||    
T  26142394 atgtctttccaatctccatttgtaaagagtttcctaagctaaaggctgtgttgataagagaagcaaatgagctagaggaaatatt 26142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 26210190 - 26210106
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 405  Q
    |||| |||||| ||||||| ||||||||| ||||||||||||||  | |||| |||||||||||| ||||| |||||||||||||    
T  26210190 atgtgtttccagtctccatttgtaaagagtttcctgagctaaatgttatgataataagagaagcaaatgagttagaggaaatatt 26210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 27376362 - 27376457
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaag 416  Q
    ||||||||||||||||||||||| ||||||||||||||||| |   |||  | |||| |||| || || |||||||||||||||||||| ||||||    
T  27376362 atgtctttccaatctccatatgtgaagagcttcctgagctagagagtctagtgataaaagaatcagataagctagaggaaatatttgtatgtgaag 27376457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 28081765 - 28081826
Alignment:
Q  232 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||| ||||||||||||||||    
T  28081765 gaagaatgcaaagagttaaagcatattattga---agatgatttggagaataaaaaatcctcaaa 28081826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 27918358 - 27918454
Alignment:
Q  196 ttaagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaa 295  Q
    ||||||||||| || || || ||| | || ||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||||||||||    
T  27918358 ttaagatgtctgccgcagttgcttcatataagaattgaagaatgcaaagagttgaagtatattattga---agatgatttggagaataaaaaatcctcaa 27918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 26180699 - 26180615
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 405  Q
    |||| |||||| ||||||| ||||||||| |||||||||||||   | || | |||||||||||| |||||||||||||||||||    
T  26180699 atgtgtttccagtctccatttgtaaagagtttcctgagctaaaggttatgttgataagagaagcaaatgagctagaggaaatatt 26180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 26237429 - 26237350
Alignment:
Q  326 tttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 405  Q
    |||||| ||||||| ||||||||| |||||||||||||   | || |||||||||||||| ||||| |||||||||||||    
T  26237429 tttccagtctccatttgtaaagagtttcctgagctaaaggttatgttcataagagaagcaaatgagttagaggaaatatt 26237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 27974226 - 27974291
Alignment:
Q  118 tattcttatcatatgcatgtgtttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    |||||||||  |||||||||||||||||| ||||| |||| || |||||||||| |||||||||||    
T  27974226 tattcttattttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtgga 27974291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 18026708 - 18026641
Alignment:
Q  226 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    ||||| ||||| ||||||||||| ||| |||||||||||   |||||||||||| ||||||||||||||||    
T  18026708 agaattgaagattgcaaagagttgaagcatattattgaa---gatgatttggagaataaaaaatcctcaaa 18026641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 26131662 - 26131578
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatt 405  Q
    ||||||||||| ||||||| ||||||||| ||||| |||||||   | |||| ||||| |||||| |||||||||||| ||||||    
T  26131662 atgtctttccagtctccatttgtaaagagtttcctaagctaaaggttatgatgataagtgaagcaaatgagctagagggaatatt 26131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 28147744 - 28147814
Alignment:
Q  223 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    |||||||| ||||||||||| ||||| | | |||||||||||   |||||||||||| ||||||||||||||||    
T  28147744 atgagaattgaagaatgcaatgagttgaggcatattattgaa---gatgatttggagaataaaaaatcctcaaa 28147814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 28131961 - 28132030
Alignment:
Q  224 tgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    ||||||| |||||||||||||| || ||| |||| ||||||   |||||||||||| ||||||||||||||||    
T  28131961 tgagaattgaagaatgcaaagaattgaagcatataattgaa---gatgatttggagaataaaaaatcctcaaa 28132030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 28481959 - 28481909
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctga 371  Q
    |||| ||||||||||||||||||||||| |||||||||||| || ||||||    
T  28481959 atgtgtttccaatctccatatgtaaagaccttcctgagctatatgatctga 28481909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 17746414 - 17746344
Alignment:
Q  223 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  17746414 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 17746344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 19047734 - 19047664
Alignment:
Q  223 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    |||||||| ||||||||||||||||| |   ||||| ||||   ||||||||||||| ||||||||||||||||    
T  19047734 atgagaattgaagaatgcaaagagttgacacatatttttga---agatgatttggagaataaaaaatcctcaaa 19047664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 26180823 - 26180769
Alignment:
Q  232 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaat 289  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||||    
T  26180823 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaaat 26180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Complemental strand, 27461284 - 27461214
Alignment:
Q  223 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||   ||||||||||| | ||||| ||||||||    
T  27461284 atgagaattgaagaatgcaaagagttgaagcatataattgaat---atgatttggagaacaaaaactcctcaaa 27461214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 27975362 - 27975432
Alignment:
Q  223 atgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    |||||||| ||||| ||||||||||| ||| |||| |||||||   ||||||||||| ||| ||||||||||||    
T  27975362 atgagaattgaagagtgcaaagagttgaagcatataattgaat---atgatttggagaatagaaaatcctcaaa 27975432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 28001872 - 28001919
Alignment:
Q  48 gtgagtttgaataaacactctagtatatcaaatatctcaacaaccttt 95  Q
    ||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  28001872 gtgagtttgaatcgacactctagtatattaaatatctccacaaccttt 28001919  T

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Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 28482412 - 28482365
Alignment:
Q  120 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 167  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28482412 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28482365  T

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Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 28511224 - 28511177
Alignment:
Q  120 ttcttatcatatgcatgtgtttatttcccattcatttattgcaggaat 167  Q
    |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  28511224 ttcttattttatacatgtgtttatttcccattcatttattgtaggaat 28511177  T

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Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 27918067 - 27918113
Alignment:
Q  134 atgtgtttatttcccattcatttattgcaggaattgagggggaatgt 180  Q
    ||||||||||||||||||| |||||| ||||| ||||| ||||||||    
T  27918067 atgtgtttatttcccattcgtttattacaggatttgagtgggaatgt 27918113  T

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Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 26210314 - 26210262
Alignment:
Q  232 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 287  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26210314 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26210262  T

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Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 26237558 - 26237506
Alignment:
Q  232 gaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 287  Q
    ||||||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  26237558 gaagaatgcaaagagttgaagcatatcattgaa---gatgatttggaggataaaaa 26237506  T

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Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 28053208 - 28053249
Alignment:
Q  142 atttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28053208 atttcacattcatttattgcaggaattgagtgggattgtgga 28053249  T

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Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  142 atttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    ||||| |||||||||||||||||||||||| |||| ||||||    
T  28063633 atttcacattcatttattgcaggaattgagtgggattgtgga 28063674  T

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Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 11418747 - 11418814
Alignment:
Q  226 agaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaaatcctcaaa 296  Q
    ||||| ||||||||||||||||| ||| |||| |||||   |||||| |||||| ||||||| ||||||||    
T  11418747 agaattgaagaatgcaaagagttgaagcatatgattga---agatgacttggagaataaaaattcctcaaa 11418814  T

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Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 18027021 - 18026977
Alignment:
Q  139 tttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  18027021 tttatttcccattcatttgtggcaggaatggagtgggaatgtgga 18026977  T

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Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 27392763 - 27392719
Alignment:
Q  139 tttatttcccattcatttattgcaggaattgagggggaatgtgga 183  Q
    |||||||||||||||||| | |||||||| ||| |||||||||||    
T  27392763 tttatttcccattcatttgtggcaggaatcgagcgggaatgtgga 27392719  T

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Target: scaffold0257 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 321 - 476
Target Start/End: Original strand, 17484 - 17639
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    |||| |||||||||||||||||||||||||||||||||||||| | |||  | |||||||||||| |||||||||||||||||| || ||||||||||||    
T  17484 atgtgtttccaatctccatatgtaaagagcttcctgagctaaagtgtctagtgataagagaagcagatgagctagaggaaatatctgcaagtgaaggtga 17583  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  17584 tgatcacaaaatggagattccaaatctaaaatttgtagtatttgaaaatctaccaa 17639  T

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Target: scaffold0257; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 17021 - 17073
Alignment:
Q  111 acttggttattcttatcatatgcatgtgtttatttcccattcatttattgcag 163  Q
    |||| |||||||||||  ||| |||||||||||||||||||||||||||||||    
T  17021 actttgttattcttattttatacatgtgtttatttcccattcatttattgcag 17073  T

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Target: scaffold0043 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 316 - 457
Target Start/End: Complemental strand, 54828 - 54687
Alignment:
Q  316 ggaacatgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaa 415  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  54828 ggaaaatgtctttccaatctccatatgtaaagagcttcctgagctagatgctctaatcataagagaagcacatgagctagaggaaatatttgtatgtgaa 54729  T
Q  416 ggtgatgatcacaaagtggagattccaaatctgaaagttgta 457  Q
    |  | |||||| |||||  |  ||||||||||||||||||||    
T  54728 gaaggtgatcagaaagtcaatcttccaaatctgaaagttgta 54687  T

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Target: scaffold0043; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 54989 - 54907
Alignment:
Q  202 tgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 287  Q
    ||||||||||| || ||| | || ||||| ||||||||||||||||| ||| |||| |||||   ||||||||||||| |||||||    
T  54989 tgtctacctcagttgcttcatataagaattgaagaatgcaaagagttgaagcatatgattga---agatgatttggagaataaaaa 54907  T

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Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 321 - 476
Target Start/End: Complemental strand, 8693432 - 8693277
Alignment:
Q  321 atgtctttccaatctccatatgtaaagagcttcctgagctaaattatctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtga 420  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||| || |||||||||| ||||||||||      
T  8693432 atgtctttccagtctccatatgtaacgagcttcctgagctaaatgttctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggtcg 8693333  T
Q  421 tgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 476  Q
    |||| | ||||| ||||||||||||||  ||  |||| ||||||||||||| ||||    
T  8693332 tgatgagaaagtcgagattccaaatctagaatatgtagtatttgaaaatcttccaa 8693277  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 8693606 - 8693519
Alignment:
Q  197 taagatgtctacctcacttacttaagatgagaatcgaagaatgcaaagagttaaagaatattattgaattagatgatttggaggataaaaa 287  Q
    |||| |||||||| || || ||| | |||||||| ||||||||||||||||| ||| ||||||||||   ||||||||||||| |||||||    
T  8693606 taaggtgtctaccacagttgctttatatgagaattgaagaatgcaaagagttgaagcatattattga---agatgatttggagaataaaaa 8693519  T

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