View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15562_high_4 (Length: 234)
Name: NF15562_high_4
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15562_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 7559586 - 7559692
Alignment:
| Q |
14 |
tcatcaacttacccgtctataacagacctattggagatgctctaattaattaaagttatttttaatgcaattttaagtatacattaataaatttaaggtt |
113 |
Q |
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| T |
7559586 |
tcatcaacttacccatctataacagacctattggagatgctctaattaattaaagttgtttttaatgcaattttaagtatacattaataaatttaaggtt |
7559685 |
T |
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| Q |
114 |
caattgc |
120 |
Q |
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| T |
7559686 |
caattgc |
7559692 |
T |
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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 7559727 - 7559807
Alignment:
| Q |
154 |
ggtcacttaagtagatttcgttcggtctaagtcacttaactatatatccgttagtcaaattagtcttttcctttaatattt |
234 |
Q |
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| T |
7559727 |
ggtcacttaagtagatttcgttcgatctaagtcaattaactatatttccgttagtcaaattagtcttttcctttaatattt |
7559807 |
T |
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