View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15562_low_1 (Length: 951)

Name: NF15562_low_1
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15562_low_1
NF15562_low_1
[»] chr2 (4 HSPs)
chr2 (51-877)||(1190176-1190981)
chr2 (635-703)||(1303198-1303266)
chr2 (534-613)||(1194479-1194555)
chr2 (855-896)||(34106512-34106553)
[»] chr7 (5 HSPs)
chr7 (730-805)||(1326055-1326130)
chr7 (730-806)||(12629822-12629898)
chr7 (730-806)||(24504166-24504242)
chr7 (750-806)||(36653261-36653317)
chr7 (744-790)||(35595322-35595368)
[»] chr4 (3 HSPs)
chr4 (847-899)||(38653855-38653909)
chr4 (881-911)||(35313253-35313283)
chr4 (752-806)||(42040442-42040496)
[»] chr3 (2 HSPs)
chr3 (730-805)||(19199999-19200074)
chr3 (752-806)||(6778670-6778724)
[»] chr1 (1 HSPs)
chr1 (75-114)||(50899929-50899968)
[»] chr5 (2 HSPs)
chr5 (854-900)||(16110081-16110126)
chr5 (847-896)||(40266557-40266605)


Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 51 - 877
Target Start/End: Original strand, 1190176 - 1190981
Alignment:
Q  51 gtttggaaaaagaggtttaaagggaccttaaatttgattttcttttttgagtgaaaattgatattgattaccggagtttaaagaagataaaattgggaat 150  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1190176 gtttggaaaaaggggtttaaagggaccttaaatttgattttcttttttgagtgaaaattgatattgattaccggagtttaaagaagataaaattgggaat 1190275  T
Q  151 gaatagcaagnnnnnnnnnnnnnnnnnnnnnntaggaagagatatgttatactagctttctagtataaataannnnnnnnnnnnnngaagaggaacacac 250  Q
    ||||||||||                      |||||||||||||||||||||||||||||||| |||||||              ||||||||||||||    
T  1190276 gaatagcaagaaaaagaaaaagaaaacaaaaataggaagagatatgttatactagctttctagtgtaaataaaaaaaaaaaattt-gaagaggaacacac 1190374  T
Q  251 tctcaccgcaaaactatttgtatccatcgttaaataatttgaattaatgttttcagacttaattggttatatatctacagattgctattttgacgggtgt 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1190375 tctcaccgcaaaactatttgtatccatcgttaaataatttgaattaatgttttcagacttaattggctatatatctacagattgctattttgacgggtgt 1190474  T
Q  351 tttcttaacttaaccagatggttagttgagagaggttactgcattttttaaactcttaggaggggttaattttattttcccttaattaaactaattagat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1190475 tttcttaacttaaccagatggttagttgagagaggttactgcattttttaaactcttaggaggggttaattttattttcccttaattaaactaattagat 1190574  T
Q  451 actaacataaatgttaatgtccgcttgaaagaaaaatcatatgactaccttcaggcttcagtgcaagaaaaagttacaaatataagagtgttaatcaaaa 550  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1190575 actaacataaatgttaatgtcctcttgaaagaaaaatcacatgactaccttcaggcttcagtgcaagaaaaagttacaaatataagagtgttaatcaaaa 1190674  T
Q  551 tattttatatttaataatgcatgctaccgagtgttcataccaaaagcaccaacttgcgagtgcatgtgtgggatggttgggggtacaatttggcaaacca 650  Q
    |||||||||||||||||||||| ||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||    
T  1190675 tattttatatttaataatgcatactaccgagtgttcatacc------------------gtgcatgtgtgggatggttgggggtacaatttggcaaacca 1190756  T
Q  651 atcgaaaataccaacttcaaacttccaggagtgggcaccataattgctttcaacaaagaatcctgctcttctcccattactcccatccaatcaaactgat 750  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1190757 attgaaaataccaacttcaaacttccaggagtgggcaccataattgctttcaacaaagaatcctgctcttctcccattactcccacccaaccaaactgat 1190856  T
Q  751 gaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaacgcacacacagcgtgacttaagtcatataaatataaaatattgcg 850  Q
     |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||||||| ||||||    
T  1190857 caaaatatccctacattagttaactaacgcatgtgtaaaattctgtgttagttaacg--cacacagcgtgacttaaatcatacaaatataaaacattgcg 1190954  T
Q  851 taagttaactcacactaatgttaatct 877  Q
    |||||||||||||||||||||||||||    
T  1190955 taagttaactcacactaatgttaatct 1190981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 703
Target Start/End: Original strand, 1303198 - 1303266
Alignment:
Q  635 acaatttggcaaaccaatcgaaaataccaacttcaaacttccaggagtgggcaccataattgctttcaa 703  Q
    ||||| ||||||||||||| | || |||||||||||||| || ||||||| |||| |||||||||||||    
T  1303198 acaatctggcaaaccaatccagaacaccaacttcaaactgccgggagtggacaccgtaattgctttcaa 1303266  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 613
Target Start/End: Complemental strand, 1194555 - 1194479
Alignment:
Q  534 aagagtgttaatcaaaatattttatatttaataatgcatgctaccgagtgttcataccaaaagcaccaacttgcgagtgc 613  Q
    |||||||||||||||||||| | |||||||||||||||    || |||||||||| | ||||||||||||| ||| ||||    
T  1194555 aagagtgttaatcaaaatatatcatatttaataatgca---cacagagtgttcatgcgaaaagcaccaactcgcgcgtgc 1194479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 855 - 896
Target Start/End: Complemental strand, 34106553 - 34106512
Alignment:
Q  855 ttaactcacactaatgttaatctttgcgtgagttaactcacg 896  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  34106553 ttaactcacactagtcttaatctttgcgtgagttaactcacg 34106512  T

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Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 730 - 805
Target Start/End: Original strand, 1326055 - 1326130
Alignment:
Q  730 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaa 805  Q
    ||||||||||||||||| ||| ||||||| ||| | |||||||||||||||| ||||||| |||||||||||||||    
T  1326055 ctcccatccaatcaaaccgatcaaaatacacctgcgttagttaactaacacaggtgtaaatttctgtgttagttaa 1326130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 730 - 806
Target Start/End: Complemental strand, 12629898 - 12629822
Alignment:
Q  730 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 806  Q
    |||||| |||||||| ||||  |||||||| || | ||||||||||||||||||||||||||| || ||||||||||    
T  12629898 ctcccacccaatcaagctgaccaaaatacctctgcgttagttaactaacacatgtgtaaaattttgcgttagttaac 12629822  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 730 - 806
Target Start/End: Complemental strand, 24504242 - 24504166
Alignment:
Q  730 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 806  Q
    |||||| |||| |||| |||| ||||||||| | | | ||||||| ||| ||||||||||||||||||||| |||||    
T  24504242 ctcccacccaaccaaattgatcaaaatacccatgcgtgagttaacaaacgcatgtgtaaaattctgtgttaattaac 24504166  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 750 - 806
Target Start/End: Original strand, 36653261 - 36653317
Alignment:
Q  750 tgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 806  Q
    ||||||||| ||| | ||||||||||||| || |||||||||| |||||||||||||    
T  36653261 tgaaaatacgcctgcgttagttaactaacgcaagtgtaaaattgtgtgttagttaac 36653317  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 744 - 790
Target Start/End: Complemental strand, 35595368 - 35595322
Alignment:
Q  744 aactgatgaaaatacccctacattagttaactaacacatgtgtaaaa 790  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  35595368 aactgatcaaaatacccctgcattagttaactaacgcaagtgtaaaa 35595322  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 847 - 899
Target Start/End: Complemental strand, 38653909 - 38653855
Alignment:
Q  847 tgcgtaagttaactcacactaatgttaatctttgc--gtgagttaactcacgttg 899  Q
    ||||| |||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  38653909 tgcgtgagttaagtcacactagtgttaatctttgcgtgtgagttaactcacgttg 38653855  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 881 - 911
Target Start/End: Original strand, 35313253 - 35313283
Alignment:
Q  881 cgtgagttaactcacgttggttttaaacaat 911  Q
    |||||||||||||||||||||||||||||||    
T  35313253 cgtgagttaactcacgttggttttaaacaat 35313283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 752 - 806
Target Start/End: Original strand, 42040442 - 42040496
Alignment:
Q  752 aaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 806  Q
    ||||||||||| | ||||||||||||| || |||||||| | |||||||||||||    
T  42040442 aaaatacccctgcgttagttaactaacgcacgtgtaaaactatgtgttagttaac 42040496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 805
Target Start/End: Complemental strand, 19200074 - 19199999
Alignment:
Q  730 ctcccatccaatcaaactgatgaaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaa 805  Q
    |||||| |||| ||||||||| |||||||||||   ||||||||| ||| |||||||||| || || |||||||||    
T  19200074 ctcccacccaaccaaactgatcaaaatacccctgtgttagttaacaaacgcatgtgtaaatttatgcgttagttaa 19199999  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 752 - 806
Target Start/End: Complemental strand, 6778724 - 6778670
Alignment:
Q  752 aaaatacccctacattagttaactaacacatgtgtaaaattctgtgttagttaac 806  Q
    ||||||||| ||| |||||||||||||||| ||||||| |  |||||||||||||    
T  6778724 aaaatacccatacgttagttaactaacacaagtgtaaattaatgtgttagttaac 6778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 50899968 - 50899929
Alignment:
Q  75 accttaaatttgattttcttttttgagtgaaaattgatat 114  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  50899968 accttaaatttgattttcttttttgtgtgaaacttgatat 50899929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 854 - 900
Target Start/End: Complemental strand, 16110126 - 16110081
Alignment:
Q  854 gttaactcacactaatgttaatctttgcgtgagttaactcacgttgg 900  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||    
T  16110126 gttaactcacactaatgttaat-tctgcatgagttaactcacgttgg 16110081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 847 - 896
Target Start/End: Complemental strand, 40266605 - 40266557
Alignment:
Q  847 tgcgtaagttaactcacactaatgttaatctttgcgtgagttaactcacg 896  Q
    ||||| ||||||||||| ||||||||||  ||||||||||||||||||||    
T  40266605 tgcgtgagttaactcacgctaatgttaaa-tttgcgtgagttaactcacg 40266557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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