View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15562_low_3 (Length: 439)
Name: NF15562_low_3
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15562_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 45168457 - 45168877
Alignment:
| Q |
1 |
tattaagaataagattgattattgtagatttcatgggattgaaattgtttataatatggctcatcttgatatggagttagctggttattgggctaaattg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45168457 |
tattaagaataagattgattattgtagattacatgggattgaaattgtttataatatggctcatcttgacatggagttagctggttattgggctaaattg |
45168556 |
T |
|
| Q |
101 |
cctatgattaggaggttaatgttgtcacaccctgaagttgaatggatttggtggatggatagtgatgcnnnnnnnacagatatggtttttgagcttcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45168557 |
cctatgattaggaggttaatgttgtcacaccctgaagttgaatggatttggtggatggatagtgatgctttttttacagatatggtttttgagcttcctt |
45168656 |
T |
|
| Q |
201 |
tgtctaagtatgatgattataatttggtcattcatggttaccctgatttgttgtttgagcagaagtcatggattgctatcaatactggtagttttctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168657 |
tgtctaagtatgatgattataatttggtcattcatggttaccctgatttgttgtttgagcagaagtcatggattgctatcaatactggtagttttctttt |
45168756 |
T |
|
| Q |
301 |
taggaattgtcagtggtctttggatttgcttgatgtttgggctcctatgggtccgaaaggtcctgtcagggaagaggcaggaaagattttgacggctaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45168757 |
taggaattgtcagtggtctttggatttgcttgatgtttgggctcctatgggtccgaaaggtcctgtcagggaagaggcgggaaagattttgacggctaat |
45168856 |
T |
|
| Q |
401 |
cttaaggggagaccggctttt |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45168857 |
cttaaggggagaccggctttt |
45168877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 258 - 397
Target Start/End: Original strand, 45174404 - 45174543
Alignment:
| Q |
258 |
agcagaagtcatggattgctatcaatactggtagttttctttttaggaattgtcagtggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174404 |
agcagaagtcatggattgctatcaatactggtagttttctttttaggaactgtcaatggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
45174503 |
T |
|
| Q |
358 |
aggtcctgtcagggaagaggcaggaaagattttgacggct |
397 |
Q |
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||||||||||||||||||||| | ||||||||||||||| |
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| T |
45174504 |
aggtcctgtcagggaagaggcctggaagattttgacggct |
45174543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 49678939 - 49679105
Alignment:
| Q |
2 |
attaagaataagattgattattgtagatttcatgggattgaaattgtttataatatggctcatcttgatatggagttagctggttattgggctaaattgc |
101 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |||||| |||||| || | ||||||| |||||||||| | | |
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| T |
49678939 |
attaagaataagattgattattgtaggcttcatgggattgagattttttataacatggctttacttgatgctgaaatggctggtttttgggctaaacttc |
49679038 |
T |
|
| Q |
102 |
ctatgattaggaggttaatgttgtcacaccctgaagttgaatggatttggtggatggatagtgatgc |
168 |
Q |
| |
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|| |||| |||| | || |||||||||| ||||||||||| | | |||||||||||||||||||| |
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|
| T |
49679039 |
ctttgatcaggaagctattgttgtcacatcctgaagttgagtttttgtggtggatggatagtgatgc |
49679105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 402
Target Start/End: Complemental strand, 13714545 - 13714169
Alignment:
| Q |
26 |
agatttcatgggattgaaattgtttataatatggctcatcttgatatggagttagctggttattgggctaaattgcctatgattaggaggttaatgttgt |
125 |
Q |
| |
|
||||| ||||| ||||||||||| || || |||||||| | || |||||| | || ||||| ||||| |||||||| |||||| | ||| | ||||| | |
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| T |
13714545 |
agattgcatggcattgaaattgtgtacaacatggctcacttggacatggagctcgcaggttactgggccaaattgcccatgattcgaaggctcatgttat |
13714446 |
T |
|
| Q |
126 |
cacaccctgaagttgaatggatttggtggatggatagtgatgcnnnnnnnacagatatggtttttgagcttcctttgtctaagtatgatgattataattt |
225 |
Q |
| |
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|||| |||||||| || ||||||||||||||||| |||||||| || || ||||| ||||||||||| || ||| ||| | ||||||||| | |
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| T |
13714445 |
cacatcctgaagtggagtggatttggtggatggacagtgatgcattcttcactgacatggtgtttgagcttcccatgagtaaatataaagattataatat |
13714346 |
T |
|
| Q |
226 |
ggtcattcatggttaccctgatttgttgtttgagcagaagtcatggattgctatcaatactggtagttttctttttaggaattgtcagtggtctttggat |
325 |
Q |
| |
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||| |||||||| || |||||||||||||| |||||||| || |||||||| ||||| || || || ||| | ||| | ||||| |||||||| |||||| |
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| T |
13714345 |
ggttattcatgggtatcctgatttgttgttcgagcagaattcttggattgcaatcaacacagggagctttttgtttcgcaattgccagtggtcgttggat |
13714246 |
T |
|
| Q |
326 |
ttgcttgatgtttgggctcctatgggtccgaaaggtcctgtcagggaagaggcaggaaagattttgacggctaatct |
402 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| || || | || ||||| || |||||||||||||| ||||| |
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|
| T |
13714245 |
ttgcttgatgcttgggcccctatgggtccgaaaggcccaatccgagaggaggctgggaagattttgacggcaaatct |
13714169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 20181566 - 20181399
Alignment:
| Q |
1 |
tattaagaataagattgattattgtagatttcatgggattgaaattgtttataatatggctcatcttgatatggagttagctggttattgggctaaattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||| |||||| | |||| |||||||||| | ||||| || | ||||||| |||||| || ||| |
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| T |
20181566 |
tattaagaacaagattgattattgtcgattacatggaattgaagtgttttacaatatggctctttttgatgctgaaatggctggtttttgggcgaagttg |
20181467 |
T |
|
| Q |
101 |
cctatgattaggaggttaatgttgtcacaccctgaagttgaatggatttggtggatggatagtgatgc |
168 |
Q |
| |
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|| ||||||||| | | | ||| ||||||| ||||| || | | |||||||||||||||||||| |
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| T |
20181466 |
ccattgattaggaagcttcttttggcacacccagaagtggagtttttgtggtggatggatagtgatgc |
20181399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 20181286 - 20181210
Alignment:
| Q |
281 |
aatactggtagttttctttttaggaattgtcagtggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
357 |
Q |
| |
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|||||||| |||||| | || ||||| ||||||||||| |||||| | ||||||| |||||| || ||||| ||||| |
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|
| T |
20181286 |
aatactgggagttttttgttgaggaactgtcagtggtcattggatattcttgatgcttgggcaccaatgggaccgaa |
20181210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 44268914 - 44268747
Alignment:
| Q |
1 |
tattaagaataagattgattattgtagatttcatgggattgaaattgtttataatatggctcatcttgatatggagttagctggttattgggctaaattg |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||| |||||| | |||| |||||||||| | ||||| || | ||||||| |||||| || ||| |
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| T |
44268914 |
tattaagaacaagattgattattgtcgattacatggaattgaagtgttttacaatatggctctttttgatgctgaaatggctggtttttgggcgaagttg |
44268815 |
T |
|
| Q |
101 |
cctatgattaggaggttaatgttgtcacaccctgaagttgaatggatttggtggatggatagtgatgc |
168 |
Q |
| |
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|| ||||||||| | | | ||| ||||||| ||||| || | | |||||||||||||||||||| |
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|
| T |
44268814 |
ccattgattaggaagcttcttttggcacacccagaagtggagtttttgtggtggatggatagtgatgc |
44268747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 44268634 - 44268558
Alignment:
| Q |
281 |
aatactggtagttttctttttaggaattgtcagtggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
357 |
Q |
| |
|
|||||||| |||||| | || ||||| ||||||||||| |||||| | ||||||| |||||| || ||||| ||||| |
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|
| T |
44268634 |
aatactgggagttttttgttgaggaactgtcagtggtcattggatattcttgatgcttgggcaccaatgggaccgaa |
44268558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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