View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15562_low_4 (Length: 248)
Name: NF15562_low_4
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15562_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45168375 - 45168139
Alignment:
| Q |
1 |
cctcgaacaaaactcgggtattcagggttttgattcagccaagctttacggtcagaatcccaatcggagattttggggccgagggtaaaagtggcatttg |
100 |
Q |
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| T |
45168375 |
cctcgaacaaaactcgggtattcagggttttgattcagccaagctttacggtcagaatcccaatcggagattttggggccgagggtaaaagtggcatttg |
45168276 |
T |
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| Q |
101 |
ggttgaaaaaggtgttgtctttatcgtcaggatcagatgggtcggcgtcggatcggatctcggcgatgatgcggttggtttcttcgatcatgttttggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168275 |
ggttgaaaaaggtgttgtctttatcgtcaggatcagatgggtcggcgtcggatcggatctcggcgatgatgcggttggtttcttcgatcatgttttggtt |
45168176 |
T |
|
| Q |
201 |
aacggcgtcggagtcggaggaaatgaggttaacgcct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45168175 |
aacggcgtcggagtcggaggaaatgaggttaacgcct |
45168139 |
T |
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