View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15562_low_5 (Length: 248)
Name: NF15562_low_5
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15562_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 18762385 - 18762159
Alignment:
| Q |
1 |
ctaaaatcttgttttagttaaaatatgagatcaaagttacattcaaatattattttaaatttcaaaagatatatataaatctctaacannnnnnnctctt |
100 |
Q |
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| T |
18762385 |
ctaaaatcttgttttagttaaaatatgagaacaaagttgcattcaaatctgattttaaattttaaaagatatatataaatctctaacatatttttctctt |
18762286 |
T |
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| Q |
101 |
ttaatatgagaacagtgcaattaaaggtagaagcaggagcatgctcacaaattacagagaaatgtaatgtgataaattgtgaatcagattgtaaatccaa |
200 |
Q |
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| T |
18762285 |
ataatatga--acagtgcaattaaaggtagaagcaggagcatgctcacaaattaccgacaaatgtaatgtcataaattgtgaatcagattgtaaatccaa |
18762188 |
T |
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| Q |
201 |
aaattacgatggtggtgtattacggtgggaat |
232 |
Q |
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| T |
18762187 |
aaattacga---tggtctattacggtgggaat |
18762159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 18759220 - 18759182
Alignment:
| Q |
114 |
agtgcaattaaaggtagaagcaggagcatgctcacaaat |
152 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
18759220 |
agtgcaaccaaaggtagaagcaggagcatgctcacaaat |
18759182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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