View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15562_low_6 (Length: 243)
Name: NF15562_low_6
Description: NF15562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15562_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28267153 - 28267380
Alignment:
| Q |
1 |
gcagcattgaaagggatggtttaccttgtcaaccacactaacattttctgctacattattttggcgacccattaaaagagagactaatataaataccgtt |
100 |
Q |
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| T |
28267153 |
gcagcattgaaagggatggtttaccttgtcaaccacactaacattttctgctacattgttttggcgacccattaaaagagagactaatataaataccgtt |
28267252 |
T |
|
| Q |
101 |
agttctttcattttcacgtactattacaatatttgctgcaaagttaagagtgctagtgatttctactttgcagggatgcatctttcaaatggttgttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28267253 |
agttctttcattttcacgtactattacaatatttgctgcaaagttaagagtgctagtgatttctactttgcagggatgcatctttcaaatggttgttgca |
28267352 |
T |
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| Q |
201 |
agcatgtggttatcttcatcatcctatg |
228 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
28267353 |
agcatgtggttatcttcatcatcttatg |
28267380 |
T |
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