View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15563_high_2 (Length: 504)
Name: NF15563_high_2
Description: NF15563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15563_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 37116243 - 37116748
Alignment:
| Q |
1 |
gatatcataaatggcttctgcacagttggtgctggaaatctggtatctgtctacacaactcgtttaaattcatttttgatcctctaaagcagttgcagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
37116243 |
gatatcataaatggcttctgcacagttggtgctggaaatctggtatctgtctacacaacttgtttaaattcatttttgatcctataaagcagttgcagga |
37116342 |
T |
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| Q |
101 |
tgcaggtgcatgtaaaaccaacggatctgaacctgatctaatagtcttacatgccactgcaccgtgcaaacagttgtagaagatctatacacttgttttt |
200 |
Q |
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| T |
37116343 |
tgcaggtgcatgtaaaaccaacggatctgaacctgatctaatagtcttacatgccactgcaccgtgcaaacagttgtagaagatctatacacttgttttt |
37116442 |
T |
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| Q |
201 |
aatttttgaatattcttttgtcaaattttcatcataaactatagtagtatgg---tgtttttgcttactccttttaaattatatttttccttcttcattc |
297 |
Q |
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| T |
37116443 |
aatttttgaatattcttttgtgaaattttcatcataaactatagtagtatggtgttgtttttgcttactccttttaaattatatttttccttcttcattc |
37116542 |
T |
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| Q |
298 |
actaaagggttagtctttataaatttgatgcttacacactttgaagtggatgaaattcaagatataagggatgaatgctatttatattttttcaggcacc |
397 |
Q |
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| T |
37116543 |
actaaagggttagtctttataaatttgatgcttacacac-ttgaagtggatgaaattcaagacataagggatgaatgctatttatattttttcaggcacc |
37116641 |
T |
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| Q |
398 |
aagagagtccaatagacaaatttcagaaatgatcaatgaatcagcaaggctagctagactattctgtgagaagaaattgccacttatggttttccttgat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37116642 |
aagagagtccaatagacaaatttcagaaatgatcaatgaatcagcaaggctagctagactattctgtgagaagaaattgccaattatggttttccttgat |
37116741 |
T |
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| Q |
498 |
tctcacc |
504 |
Q |
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| T |
37116742 |
tctcacc |
37116748 |
T |
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