View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15563_low_1 (Length: 595)
Name: NF15563_low_1
Description: NF15563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15563_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Original strand, 49825056 - 49825627
Alignment:
| Q |
8 |
tagcaaaggagcatggtatagatataaatgaagtctgtggaactggaaaagatggaagggttttaaaagaagacgtgctcaattttgctgtcaagaaagg |
107 |
Q |
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| T |
49825056 |
tagcaaaggagcatggtatagatataaatgaagtctgtggaactggaaaagatggaagggttttaaaagaagacgtgctcaattttgctgtcaagaaagg |
49825155 |
T |
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| Q |
108 |
gatcagtaaaactccatctgcttttatgcatgctgatattgaagaacagcttcagggaacagaaggatacagctgtgatgcgaaaaataaatatgatagg |
207 |
Q |
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| T |
49825156 |
gatcagtaaaactccatctgcttttttgcatgctgattttggagaacagcttcagggaacagaaggatacagctgtgatgcgaaaaataaatatgatagg |
49825255 |
T |
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| Q |
208 |
ccttctgaggacataatacttcccctaaggtaaaaatgaatacaaacatgaatttgaagttactcagtagccgggataagagagacaagatagataagtt |
307 |
Q |
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| T |
49825256 |
ccttctgtggacataatacttcccctaaggtaaaaatgaatacaaacatgaatttgaagttacgcagtagccgggataagagagacaagatagataagtt |
49825355 |
T |
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| Q |
308 |
atcatattttgtctcaatcaagtatttgatgagtcagtagaatgtgataagctaatcctgtccccttatcatattctgcctctctagttaaaatcttgtc |
407 |
Q |
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| T |
49825356 |
atcatattttgtctcaatcaagtatttgatgagtcagtagaatgtgataagctaatcctgtccccttatcatattctgcctctctagttaaaatcttgtc |
49825455 |
T |
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| Q |
408 |
atggaggtgaggctggtttaaaaatcagcagaacaggataagaaaataattttcttgttaggtgcacatcaagcacaagatatgaatcagaccttatcat |
507 |
Q |
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| T |
49825456 |
atggaggtgaggctggtttaaaaatcagcagaacaggataagaaaataattttcttgttaggtgcacatcaaacacaagatatgaatcagaccttatcat |
49825555 |
T |
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| Q |
508 |
attcatattatatgttatccttatccaactcttttatattacatgtctctataattttctgaccatcaaatg |
579 |
Q |
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| T |
49825556 |
attcatattatatgttatccttatccaactcttttatattacatgtctctataattttctgaccatcaaatg |
49825627 |
T |
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