View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15563_low_2 (Length: 525)
Name: NF15563_low_2
Description: NF15563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15563_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 40 - 504
Target Start/End: Complemental strand, 50814500 - 50814039
Alignment:
| Q |
40 |
atgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgagggatgt |
139 |
Q |
| |
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||||| || ||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50814500 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgt |
50814404 |
T |
|
| Q |
140 |
caaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataa |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814403 |
caaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataa |
50814304 |
T |
|
| Q |
240 |
accaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagt |
339 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814303 |
accaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagt |
50814204 |
T |
|
| Q |
340 |
agaagaatttacgaaaggcgaaatggtctgtaaaggagtggtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaat |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50814203 |
agaagaatttacgaaaggcgaaatggtctgtaaaggagtggtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaat |
50814104 |
T |
|
| Q |
440 |
ggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccggca |
504 |
Q |
| |
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| T |
50814103 |
ggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccggca |
50814039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 40 - 504
Target Start/End: Original strand, 50861364 - 50861825
Alignment:
| Q |
40 |
atgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgagggatgt |
139 |
Q |
| |
|
||||| || ||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
50861364 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgt |
50861460 |
T |
|
| Q |
140 |
caaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataa |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50861461 |
caaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttcaactcctgaagtaattgcagcataa |
50861560 |
T |
|
| Q |
240 |
accaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50861561 |
accaaattgttgaaatcgttcttgtctatgaagctatagcgacaattaagctggaacgagaggatgggtagactcttatcccgcatgctcatgaaggagt |
50861660 |
T |
|
| Q |
340 |
agaagaatttacgaaaggcgaaatggtctgtaaaggagtggtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaat |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861661 |
agaagaatttacgaaaggcgaaatggtctgtaaaggagtggtcatcgaatcggagcatcagctgcgagaggaagagtggattccacctctttgagagaat |
50861760 |
T |
|
| Q |
440 |
ggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccggca |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50861761 |
ggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccggca |
50861825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 15 - 502
Target Start/End: Complemental strand, 39558925 - 39558439
Alignment:
| Q |
15 |
agaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatg |
114 |
Q |
| |
|
|||||||||| ||| || ||| ||| || | ||| |||||||| ||||||||| ||||||||| ||||||||| |||||||||||||| |||||||| |
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|
| T |
39558925 |
agaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggacttttagcaagggaagattaacgaaaggaacttc---gttcaatg |
39558829 |
T |
|
| Q |
115 |
ttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg---ttaagatggcagagatttatgcttaggtt |
211 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| || | ||| ||| | ||||||||| ||||||||||| |
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|
| T |
39558828 |
ttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatcggagttatacttgcagagattgatgcttaggtt |
39558729 |
T |
|
| Q |
212 |
ttcaactcctgaagtaattgcagcataaaccaaattgttgaaatcgttcttgtctatgaagctatagcgaaaattaagctggaacgagaggatgggtaga |
311 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||| || |||| | || | |||| | || | ||||||| ||||| ||||||||||||| | |
|
|
| T |
39558728 |
ttcaactcctcctataattgcagcatataccaaattgtaaaagtcgtagtcgtagaagaagtagtggctacaattaaggtggaa-gagaggatgggtaaa |
39558630 |
T |
|
| Q |
312 |
ctcttatcccgcatgctcatgaaggagtagaagaatttacgaaaggcgaaatggtctgtaaaggagtggtcatcgaatcggagcatcagctgcgagagga |
411 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| || ||||||||||||| |
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|
| T |
39558629 |
ttcttatctcgcatgctcattaaggagtagaagaattcacgaaaggcgaaatagtctggaaaggtgtggtcatcgaatcggagtatgagctgcgagagga |
39558530 |
T |
|
| Q |
412 |
agagtggattccacctctttgagagaatggttgtggccgctgcgtctttcgtcggaaggaatgacagaatttcatgaagaagtgtgtccgg |
502 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| || || || |||| ||||||||||| |||||| |
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|
| T |
39558529 |
agagtggcttccacctctttgagaggatggttgtggccgcagcgtctttggtaggaagaaaagagaggatttgatgaagaagtgcgtccgg |
39558439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 39559189 - 39558983
Alignment:
| Q |
15 |
agaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39559189 |
agaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatg |
39559090 |
T |
|
| Q |
115 |
ttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttc |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| |||||||| | ||||||||||| |||||||||||||| |
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|
| T |
39559089 |
ttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttc |
39558990 |
T |
|
| Q |
215 |
aactcct |
221 |
Q |
| |
|
||||||| |
|
|
| T |
39558989 |
aactcct |
39558983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 50814776 - 50814634
Alignment:
| Q |
37 |
aatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggga |
136 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |
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|
| T |
50814776 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttg |
50814680 |
T |
|
| Q |
137 |
tgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg |
182 |
Q |
| |
|
|||| ||||||| ||||||| ||||||| ||||||| |||||||| |
|
|
| T |
50814679 |
ggtcagggttttggtagttaggatgaaagaaggcagtatggtttcg |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 50861088 - 50861230
Alignment:
| Q |
37 |
aatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggga |
136 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |
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|
| T |
50861088 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttg |
50861184 |
T |
|
| Q |
137 |
tgtcaaggttttgctagttagaatgaaaggaggcagtgtggtttcg |
182 |
Q |
| |
|
|||| ||||||| ||||||| ||||||| ||||||| |||||||| |
|
|
| T |
50861185 |
ggtcagggttttggtagttaggatgaaagaaggcagtatggtttcg |
50861230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 49857492 - 49857589
Alignment:
| Q |
37 |
aatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgagg |
134 |
Q |
| |
|
|||||||| ||| ||| |||| |||||||| | ||| ||||| |||||||| || |||||| |||| | ||||||||||| |||||||||||||||| |
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|
| T |
49857492 |
aatatgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgagg |
49857589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 49760622 - 49760736
Alignment:
| Q |
17 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
116 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
|
|
| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
117 |
accctcttcaatttgagg |
134 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
49760719 |
atcctcttcaatttgagg |
49760736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 31211027 - 31210981
Alignment:
| Q |
113 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaa |
159 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaa |
31210981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 19370982 - 19371034
Alignment:
| Q |
113 |
tgttaccctcttcaatttgagggatgtcaaggttttgctagttagaatgaaag |
165 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| |||||||| ||||| |
|
|
| T |
19370982 |
tgttatcctcttcaatttgaggaatgccaaggttttggaagttagaaggaaag |
19371034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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