View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15563_low_4 (Length: 462)
Name: NF15563_low_4
Description: NF15563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15563_low_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 41652879 - 41653348
Alignment:
| Q |
13 |
taggcagagttggtaatatggcgtagctataaatactctcacaaacctctttctttc---------------------caaaccctaacctctctctttc |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41652879 |
taggcagagttggtaatatggcgtagctataaatactctcacaaacctctttctttctttcttcacttcaattcaattcaaaccctaacctctctctttc |
41652978 |
T |
|
| Q |
92 |
tctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41652979 |
tctgcattgatcaagaagtgaagaacaatgtcgagtttcggagccacgaataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctg |
41653078 |
T |
|
| Q |
192 |
tttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggtcagtttctcatgttagttgtatcttttctgtttctt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41653079 |
tttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggtcagtttctcattctagttgtatcttttctgtttctt |
41653178 |
T |
|
| Q |
292 |
gcattcatcattcatcattatttcttcttaacaggttctgtgttgggaggtttcacagaatggaaatactcttagtagtactcccaaagcttctatttca |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653179 |
gcattcatcattcatcattatttcttcttaacaggttctgtgttgggaggtttcaaagaatggaaatactcttagtagtactcccaaagcttctatttct |
41653278 |
T |
|
| Q |
392 |
tatgatcaacctgtaagtacgtgctattaatacatgcatgcatgcttttctataatcacaaagtaattcaa |
462 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41653279 |
catgatcaacctgtaagtacgtactattaatgcatgcatgcatgcttttctataatcac-aagtaattcaa |
41653348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 28820172 - 28820102
Alignment:
| Q |
185 |
gattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
255 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
28820172 |
gattctatttccagtctttctttcagtcctaaagccaatttcctcgtcgctacttcctgggacaaccaggt |
28820102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 1466350 - 1466278
Alignment:
| Q |
183 |
ctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| || || |||||||||||||||| || ||||| |
|
|
| T |
1466350 |
ctgattctgtttccagtctcaatttcagtcccaaatccaacttacttgttgctacttcttgggataatcaggt |
1466278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University