View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15563_low_5 (Length: 408)
Name: NF15563_low_5
Description: NF15563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15563_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 34698321 - 34697980
Alignment:
| Q |
14 |
caaaggcatgggtggttttattagggacttgaaggaagagtttaagagtgttgagaatgtttatgtttggcatgcactttgtgggtattggggtggggtt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34698321 |
caaaggtatgggtggttttattagggacttgaaggaagagtttaagagtgttgagaatgtttatgtttggcatgcactttgtgggtattggggtggggtt |
34698222 |
T |
|
| Q |
114 |
agacctaaagtgaagggcatgcccgaagctaaggttgttactccgaagctgtctccggggctgaagatgacaatggaggatttagcggtggataagattg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34698221 |
agacctaaagtgaagggcatgcccgaagctaaggttgttactccgaagctgtctccggggctgaagatgacaatggaggatttagcggtggataagattg |
34698122 |
T |
|
| Q |
214 |
ttaacaatggtgtaggcttagtgccaccaaatttagcccaagaaatgtttgaagggcttcactctcatttggaatcggtgggcattgacggtgttaaagt |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34698121 |
ttaacaatggtgtagggttagtgccaccaaatttagcccaagaaatgtttgaagggcttcactctcatttggaatcggtgggcattgacggtgttaaagt |
34698022 |
T |
|
| Q |
314 |
tgacgttattcatgtaagtcttctaaaattctctcttgtctt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34698021 |
tgacgttattcatgtaagtcttctaaaattctctcttgtctt |
34697980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 43563921 - 43563873
Alignment:
| Q |
70 |
atgtttatgtttggcatgcactttgtgggtattggggtggggttagacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
43563921 |
atgtttatgtttggcatgcactttgtggttattggggtggtgtgagacc |
43563873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 36431900 - 36431851
Alignment:
| Q |
70 |
atgtttatgtttggcatgcactttgtgggtattggggtggggttagacct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || |||||| |
|
|
| T |
36431900 |
atgtttatgtttggcatgcactttgtggtgcttggggtggtgtgagacct |
36431851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 43639596 - 43639547
Alignment:
| Q |
72 |
gtttatgtttggcatgcactttgtgggtattggggtggggttagacctaa |
121 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
43639596 |
gtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaa |
43639547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University