View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15563_low_7 (Length: 299)
Name: NF15563_low_7
Description: NF15563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15563_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 50814492 - 50814776
Alignment:
| Q |
1 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814492 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
50814591 |
T |
|
| Q |
101 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814592 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
50814691 |
T |
|
| Q |
201 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtcagtttcacatatt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50814692 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtcagtttcacatatt |
50814776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 50861372 - 50861088
Alignment:
| Q |
1 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861372 |
ctttcacatgtcctgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgattcaataactacgactttctttaaggt |
50861273 |
T |
|
| Q |
101 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861272 |
gattggtagagatagaggagagtttataaagtgccgttactccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattg |
50861173 |
T |
|
| Q |
201 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtcagtttcacatatt |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50861172 |
aagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtcagtttcacatatt |
50861088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 282
Target Start/End: Original strand, 50814361 - 50814500
Alignment:
| Q |
143 |
cgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttcgttgatcttccc |
242 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50814361 |
cgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaacgaagttcctttcgttgatcttccc |
50814460 |
T |
|
| Q |
243 |
ttgctaaaagtccttcacttagaatctgtcagtttcacat |
282 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50814461 |
tcactaaaagtccttcacttagaatctgtcactttcacat |
50814500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 50861503 - 50861364
Alignment:
| Q |
143 |
cgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttcgttgatcttccc |
242 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50861503 |
cgaaaccacactgccttctttcattctaactagcaaaaccttgacatccctcaaattgaagagggtaacattgaacgaagttcctttcgttgatcttccc |
50861404 |
T |
|
| Q |
243 |
ttgctaaaagtccttcacttagaatctgtcagtttcacat |
282 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50861403 |
tcactaaaagtccttcacttagaatctgtcactttcacat |
50861364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 39558757 - 39558896
Alignment:
| Q |
139 |
actccgaaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattgaaccaagttcctttcgttgatct |
238 |
Q |
| |
|
||||||| | |||||||||| |||| | ||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
39558757 |
actccgatatcatactgcctgctttggttctaactaccaaaaccttgacagtcctcaaattgaagagtgtaacattgaacgaagttcctttcgttaatct |
39558856 |
T |
|
| Q |
239 |
tcccttgctaaaagtccttcacttagaatctgtcagtttc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39558857 |
tcccttgctaaaagtccttcacttagaatctgtcggtttc |
39558896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 287
Target Start/End: Original strand, 39559024 - 39559169
Alignment:
| Q |
145 |
aaaccatactgccttctttcatcctaactaccaaaaccctgacccaactcaaattgaagaggataacattga---accaagttcctttcgttgatcttcc |
241 |
Q |
| |
|
|||||| | |||||||||| | ||||||| ||||||| ||||| ||||||||||||||| ||||||||| | ||||||||||||| |||||||| |
|
|
| T |
39559024 |
aaaccacattgccttctttagttctaactaacaaaaccttgaccgtcctcaaattgaagagggtaacattgaatgaagaagttcctttcgtcgatcttcc |
39559123 |
T |
|
| Q |
242 |
cttgctaaaagtccttcacttagaatctgtcagtttcacatattct |
287 |
Q |
| |
|
|| ||||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
39559124 |
ctcgctaaaagtgcttcacttaaaatctgtcagttacacatattct |
39559169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 49857588 - 49857492
Alignment:
| Q |
192 |
ctcaaattgaagaggataacattgaacca---agttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtcagtttcacatatt |
285 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||||| ||||||||||| | ||| ||| |||||||||| ||||| ||| |||||||||||| |
|
|
| T |
49857588 |
ctcaaattgaagaggataacattgaactatgaaggtcctttggttgatcttccgtcgctcaaaatccttcacttggaatccgtctgtttcacatatt |
49857492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 39558905 - 39558966
Alignment:
| Q |
14 |
tgagtacttgatgaaacttctatctagttgtcccattctagagaagttggaagcaaatgatt |
75 |
Q |
| |
|
||||||| | |||||||||||||| | ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
39558905 |
tgagtacatcatgaaacttctatccggctgtcccattctagaggagttggaagcaaaggatt |
39558966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 39559180 - 39559225
Alignment:
| Q |
25 |
tgaaacttctatctagttgtcccattctagagaagttggaagcaaa |
70 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
39559180 |
tgaaacttctatctgtttgtcccattctagaggagttggaagcaaa |
39559225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 49760735 - 49760642
Alignment:
| Q |
192 |
ctcaaattgaagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatctgtcagtttcacatatt |
285 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | |||||||||||| | ||| |||| ||||||||| ||| ||||| || |||||||| |
|
|
| T |
49760735 |
ctcaaattgaagaggataacattgactggagttccgtacgttgatcttccttcgctcaaagcccttcacttggaacttgtcacttacacatatt |
49760642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 50814793 - 50814834
Alignment:
| Q |
29 |
acttctatctagttgtcccattctagagaagttggaagcaaa |
70 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
50814793 |
acttctatctggttgtcccgttctagaggagttggaagcaaa |
50814834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 50861071 - 50861030
Alignment:
| Q |
29 |
acttctatctagttgtcccattctagagaagttggaagcaaa |
70 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
50861071 |
acttctatctggttgtcccgttctagaggagttggaagcaaa |
50861030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 19371002 - 19370925
Alignment:
| Q |
192 |
ctcaaattgaagaggataacattgaaccaagttcctttcgttgatcttcccttgctaaaagtccttcacttagaatct |
269 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| | |||||||||||||| ||| ||||| |||||| | |||||| |
|
|
| T |
19371002 |
ctcaaattgaagaggataacaatcaaccaagtttcaaacgttgatcttccctcgctcaaagtacttcacatggaatct |
19370925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University