View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15564_high_7 (Length: 230)
Name: NF15564_high_7
Description: NF15564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15564_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 44993296 - 44993510
Alignment:
| Q |
1 |
tgagggagctgggaagctttgagttaatatgtacccttaaacgtgggagtggtccaaatattttggactagcagaatgaaaattttcaatggtagttctt |
100 |
Q |
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| T |
44993296 |
tgagggagctgggaagctttgagttaatatgtacccttaaacgtgggaggggtccaaatattttggactagcagaatgaaaattttcaatggtagttctt |
44993395 |
T |
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| Q |
101 |
cattccacgtgtttgtttgaattggctggccagtttggtcaatggtatacaaacnnnnnnncgactatcctaggatggaaacttacacaatttaagttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44993396 |
cattccacgtgtttgtttgaattggctggccagtttggtcaatggtatacaaactttttttcgactatcctaggatggaaacttacacaatttaagttag |
44993495 |
T |
|
| Q |
201 |
atttgacgatgataa |
215 |
Q |
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|||||| |||||||| |
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| T |
44993496 |
atttgatgatgataa |
44993510 |
T |
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