View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15564_low_6 (Length: 252)
Name: NF15564_low_6
Description: NF15564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15564_low_6 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 6907542 - 6907310
Alignment:
| Q |
15 |
aagaacaagacacaacagagagggagagggaggcggggataaaagaaaatgtccccagacctaactcccctctcaaaacaaaataactgtaacttcatta |
114 |
Q |
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| T |
6907542 |
aagaacaagacacaacagagagggagagggaggcggggataaaagaaaatgtccccaaacctatctcccctctcaaaacaaaataactgtaacttcatta |
6907443 |
T |
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| Q |
115 |
atttttcggacctgccatgcaagcgcacctgacatagcaaagatccatttaacacagataccttgtgtggttgtgtactgtatatacttcacactcacat |
214 |
Q |
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| T |
6907442 |
atttttcggacctgccatgcaagcgcacctgacatagcaaagatccatttaacacagataccttgtgtggttg-----tgtatatacttcacactcacat |
6907348 |
T |
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| Q |
215 |
tacatgtatctcacgcaaccacgacttctgatctcacc |
252 |
Q |
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| T |
6907347 |
tacatgtatctcacgcaaccacgacttctgatctcacc |
6907310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 6926635 - 6926435
Alignment:
| Q |
49 |
ggggataaaagaaaatgtccccagacctaactcccctctcaaaacaaaataactgtaacttcattaa--tttttcggacctgccatgcaagcgcacctga |
146 |
Q |
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| T |
6926635 |
ggggataaaataaaatgtccccaaacctatctcccctctcaaaacaaaataactgtaacttcattaagatttttcggacctgccatgcaagcgcacctga |
6926536 |
T |
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| Q |
147 |
catagcaaagatccatttaacacagataccttgtgtggttgtgtactgtatatacttcacactcacattacatgtatctcacgcaaccacgacttctgat |
246 |
Q |
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| T |
6926535 |
catggcaaagatccatttaacacagataccttgtgctgttg-----tgtatatacttcacactcacattacatgtatctcacgcaacctcgacttctgat |
6926441 |
T |
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| Q |
247 |
ctcacc |
252 |
Q |
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| T |
6926440 |
cccacc |
6926435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 6926383 - 6926254
Alignment:
| Q |
115 |
atttttcggacctgccatgcaagcgcacctgacatagcaaagatccatttaacacagataccttgtgtggttgtgtactgtatatacttcacactcacat |
214 |
Q |
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| T |
6926383 |
atttttaggacctgccacgcaagcacgcctggcatggcgaagatccatttaacacagataccttgtgttgt--------gtatatacttcacactcacat |
6926292 |
T |
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| Q |
215 |
tacatgtatctcacgcaaccacgacttctgatctcacc |
252 |
Q |
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| T |
6926291 |
tacatgcatctcacgcaaacacgactcctgatctcacc |
6926254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 6905768 - 6905685
Alignment:
| Q |
82 |
ccctctcaaaacaaaataactgtaacttcattaa--tttttcggacctgccatgcaagcgcacctgacatagcaaagatccatt |
163 |
Q |
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| T |
6905768 |
ccctctcaaaacaaaataactgcaattttattaacttttttcggatctgccatgcaagcgcacctgacatggcaaagatccatt |
6905685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 6924412 - 6924329
Alignment:
| Q |
82 |
ccctctcaaaacaaaataactgtaacttcattaa--tttttcggacctgccatgcaagcgcacctgacatagcaaagatccatt |
163 |
Q |
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| T |
6924412 |
ccctctcaaaacaaaataactgcaattttattaagctttttcggatctgccaagcaagcgcacctgacatggcaaagatccatt |
6924329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 6907251 - 6907149
Alignment:
| Q |
141 |
acctgacatagcaaagatccatttaacacagataccttgtgtggttgtgtactgtatatacttcacactcacattacatgtatctcacgcaaccacgact |
240 |
Q |
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| T |
6907251 |
acctgccatggcaaagatccatttaacacagataccttgtgttgttg-----cgtatatacctcacactcgcattacatgtttgtcacgcatccacgact |
6907157 |
T |
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| Q |
241 |
tctgatct |
248 |
Q |
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| T |
6907156 |
tcttatct |
6907149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 6927818 - 6927739
Alignment:
| Q |
83 |
cctctcaaaacaaaataactgtaacttcattaa--tttttcggacctgccatgcaagcgcacctgacatagcaaagatcc |
160 |
Q |
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| T |
6927818 |
cctctcaaaacaaaataactataattttattaagatatttcagacctggcatgcaagcgcacctgacatggcaaagatcc |
6927739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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