View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15564_low_7 (Length: 248)
Name: NF15564_low_7
Description: NF15564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15564_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31924646 - 31924412
Alignment:
| Q |
1 |
ccctgatgctttgagtaacaaatcaattgcttccctcttgctatctgatagtacaaaaatgtttaaccatgattattgactgttcatattgtggatcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31924646 |
ccctgatgctttgagtaacaaatcaattgcttccctcttgctatctgatagtacaaaaatgtttaaccatgattattgactgttcatattgtggatcctt |
31924547 |
T |
|
| Q |
101 |
caataggatccgattctatgtaacaccgcacttcacattgaaagcgataaacagtgatccgattctatgacacatgtgattatattcaattgttctattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31924546 |
caataggatccgattctatgtaacaccgcacttcacattgaaagctataaacagtgatccgattctatgacacatgtgattatattcaattgttctattt |
31924447 |
T |
|
| Q |
201 |
tcttaaattatcatcggtgtcaacgtgtcaatttc |
235 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31924446 |
tcttaaattattatcggtgtcaacgtgtcaatttc |
31924412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 26462652 - 26462712
Alignment:
| Q |
169 |
gacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtc |
229 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
26462652 |
gacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtc |
26462712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 16808956 - 16809018
Alignment:
| Q |
168 |
tgacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtca |
230 |
Q |
| |
|
|||||| | |||||||||| |||| ||||||||||||||||||| | ||||||| | |||||| |
|
|
| T |
16808956 |
tgacacgtatgattatatttaattattctattttcttaaattattaccggtgtcgatgtgtca |
16809018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 27424770 - 27424811
Alignment:
| Q |
170 |
acacatgtgattatattcaattgttctattttcttaaattat |
211 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
27424770 |
acacatgttattatattcaatcattctattttcttaaattat |
27424811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 4323900 - 4323937
Alignment:
| Q |
193 |
ttctattttcttaaattatcatcggtgtcaacgtgtca |
230 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
4323900 |
ttctattttcttaaattattatcgttgtcaacgtgtca |
4323937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 10038452 - 10038485
Alignment:
| Q |
170 |
acacatgtgattatattcaattgttctattttct |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
10038452 |
acacatgtgattatattcaattattctattttct |
10038485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 27777251 - 27777287
Alignment:
| Q |
170 |
acacatgtgattatattcaattgttctattttcttaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
27777251 |
acacatgtgattatattcaattgttttattttgttaa |
27777287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University