View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_high_10 (Length: 352)
Name: NF15565_high_10
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 318
Target Start/End: Complemental strand, 3114656 - 3114360
Alignment:
| Q |
21 |
agtgtattcccttggcatgccttgctgctacatttgaataggcaattaagttgtaaccagtttcttacttcttttaccaaatttcaatgatttattgatt |
120 |
Q |
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| T |
3114656 |
agtgtattcccttggcatgccttgctgctatttttgaataggcaattaagttgtaaccagtttcttacttcttt-accaaatttctatgatttattgatt |
3114558 |
T |
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| Q |
121 |
tcttgatatgtaggttggacttatgaacacttatgatgaggaaactcgcagctttttcaagcactcttcagttagggtgcttctttgcccaagatccgga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3114557 |
tcttgatatgtaggttggacttatgaacacttatgatgaggaaactcgcagctttttcaagcactcttcagttagggtgcttctttgcccaagatctgga |
3114458 |
T |
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| Q |
221 |
ggaaaaggacatagcttgctcaaacaacaggtcagttagagaaaaactatttttgtatgtctaactgcatagtaccgaattacaaaaaatgctttgga |
318 |
Q |
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| T |
3114457 |
ggaaaaggacatagcttgctgaaacaacaggtcagttagagaaaaactatttttgtatgtctaactgcatagtactgaattacaaaaaatgctttgga |
3114360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 3120458 - 3120293
Alignment:
| Q |
116 |
tgatttcttgatatgtaggttggacttatgaacacttatgatgaggaaactcgcagctttttcaagcactcttcagttagggtgcttctttgcccaagat |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3120458 |
tgatttgttgatatgtaggttggacttatgaacacttatgacgaggaaactcgcagttttttcaagcactcttcagttaaggtgcttctttgcccaagat |
3120359 |
T |
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| Q |
216 |
ccggaggaaaaggacatagcttgctcaaacaacaggtcagttagagaaaaactatttttgtatgtcta |
283 |
Q |
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| T |
3120358 |
ctggaggaaaaggacatagctggctcaaacagcaggtcagtt--tgaaaaactatttttgtatgtcta |
3120293 |
T |
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