View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_high_13 (Length: 331)
Name: NF15565_high_13
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_high_13 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 30187394 - 30187717
Alignment:
| Q |
8 |
tgaaatgaaacaaagaattcaatcaataaataactaactctaaaagatagctgtgaattgctcatttgctatgaattacttattgggtttattcaatatt |
107 |
Q |
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| T |
30187394 |
tgaaatgaaacaaagaattcaatcaataaataactaactctaaaagatagctgtgaattgctcatttgctatgaattacttattgggtttattcaatatt |
30187493 |
T |
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| Q |
108 |
ctagcttttcttatataaattgatattatctgtagtaacaaattttaggattaatctaacgtgtcttcatgttgctgaaatcaaaaactaaaaagtattt |
207 |
Q |
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| T |
30187494 |
ctagcttttcttatataaattgatattatctgtagtaacaaattttaggattaatctaacgtgtcttcatgttgctgaaatcaaaaactaaaaagtattt |
30187593 |
T |
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| Q |
208 |
atcaaatagtaaacgtgtcctattaggtggtgtagttctagaaagtatataaatatctggagcttgctagagattcattcacagatttccttgtgttttc |
307 |
Q |
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| T |
30187594 |
atcaaatagtaaacgtgtcctattaggtggtgtagttctagaaagtatataaatatctggagcttgctagagattcattcacagatttccttgtgttttc |
30187693 |
T |
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| Q |
308 |
gttccgatattcaaaaaattctgc |
331 |
Q |
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| T |
30187694 |
gttccgatattcaaaaaattctgc |
30187717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 30168567 - 30168513
Alignment:
| Q |
8 |
tgaaatgaaacaaagaattcaatcaataaataactaactctaaaagatagctgtga |
63 |
Q |
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| T |
30168567 |
tgaaatgaaacaaagaattcaatcaataaataactaact-tgaaagatagccgtga |
30168513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 30009083 - 30009026
Alignment:
| Q |
8 |
tgaaatgaaacaaagaattcaatcaataaataactaactctaaaagatagctgtgaatt |
66 |
Q |
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| T |
30009083 |
tgaaatgaaacatgggattcaatcaataaataacaaact-tgaaagatagctgtgaatt |
30009026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 30065580 - 30065523
Alignment:
| Q |
8 |
tgaaatgaaacaaagaattcaatcaataaataactaactctaaaagatagctgtgaatt |
66 |
Q |
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|||||||||||| | |||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
30065580 |
tgaaatgaaacatgggattcaatcaataaataacaaact-tgaaagatagctgtgaatt |
30065523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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