View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_high_2 (Length: 578)
Name: NF15565_high_2
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 147 - 494
Target Start/End: Complemental strand, 27197629 - 27197283
Alignment:
| Q |
147 |
gtctcacgatgatgtggtggcggcgcttgagaggtcgttgttggtgagtatggaaagtggagtttctaagagtttgagttgagagaatttaggtttaaag |
246 |
Q |
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| T |
27197629 |
gtctcacgatgatgtggtggcggcgcttgagaggccgttgttggtgagtatggaaaggggagtttctaagagtttgagttgagagaatttaggtttaaag |
27197530 |
T |
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| Q |
247 |
agaagtttgtattgtgaaaatgagtaaggtagggccgcttaggtttgaagtgcgnnnnnnnntgaatttatgatgtttaaaatgcaaaaataagtacacc |
346 |
Q |
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| T |
27197529 |
agaagtttgtattgtgaaaatgagtaaggtagggccgcttaggtttgaagtgcg-aaaaaaatgaatttatgatgtttaaaatgcaaaaataagtacacc |
27197431 |
T |
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| Q |
347 |
ctcaccaatttgtagatcatatannnnnnnattatggaaattaaatgtgttgaggttcaccaaagttaggatatagatcatcattatcaacgagatctta |
446 |
Q |
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| T |
27197430 |
ctcaccaatttgtagttcttatgtttttttattatggaaattaaatgtgttggggctcaccaaagttagaatatagatcatcattatcaacgagatctta |
27197331 |
T |
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| Q |
447 |
acgctaataacgatagctgaacccacgctattgttaccacatatatgt |
494 |
Q |
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| T |
27197330 |
acgctaataacgatagttgaacccacactattgctaccacatatatgt |
27197283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 27197758 - 27197705
Alignment:
| Q |
18 |
ccctcatcctaaaaaatgatgttcttcgtttagtttactctcgtgctgatacaa |
71 |
Q |
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| T |
27197758 |
ccctcaccttaaaaaatgatgttctttgtttagtttactctcgtgctgatacaa |
27197705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 578
Target Start/End: Complemental strand, 27197056 - 27197018
Alignment:
| Q |
540 |
gcttctccattcatagaagctttctcctctgtgtggtgt |
578 |
Q |
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| T |
27197056 |
gcttctccattcatagaagttttctcctctgtgtggtgt |
27197018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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