View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_high_21 (Length: 269)
Name: NF15565_high_21
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 31796137 - 31796335
Alignment:
| Q |
16 |
atacccagcttcatcccacaacattctaagaaaagggtataagagnnnnnnngacaaatacaagcttaaagtgtttttaattgttgcatcttataacaaa |
115 |
Q |
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| T |
31796137 |
atacccaacttcatcccacaacattctaagaaaagggtataagagaaaaaaagacaaatacaagcttaaagtgtttttaattgttgcatcttataacaaa |
31796236 |
T |
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| Q |
116 |
gaaataaagtctatataagtatcaatttgcttgtcttacacttacgaagcattttgtgtcctagaagacttatcaagcaaaaaagtaaacaattattta |
214 |
Q |
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| T |
31796237 |
gaaataaagtctatataagtatcaatttgcttgtcttacacttacgaagcattttgtttcctataagacttatcaagcaaaaaagtaaacaattattta |
31796335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 31796374 - 31796420
Alignment:
| Q |
207 |
attatttaattaaataaacttaaaagtgaaatgtgtaattttgatgt |
253 |
Q |
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| T |
31796374 |
attatttaattaaataaacttaaaagtgaaatgtgtaattttgatgt |
31796420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 52733025 - 52732966
Alignment:
| Q |
73 |
atacaagcttaaagtgtttttaattgttgcatcttataacaaagaaataaagtctatata |
132 |
Q |
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| T |
52733025 |
atacaaacttaaagtgttttttattggtgcatcttataacaaagaaataaagtttatata |
52732966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 1746570 - 1746529
Alignment:
| Q |
212 |
ttaattaaataaacttaaaagtgaaatgtgtaattttgatgt |
253 |
Q |
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| T |
1746570 |
ttaattaaatgaatttaaaagtgaaatgtgcaattttgatgt |
1746529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 17376036 - 17376000
Alignment:
| Q |
212 |
ttaattaaataaacttaaaagtgaaatgtgtaatttt |
248 |
Q |
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| T |
17376036 |
ttaattaaatagacttaaaactgaaatgtgtaatttt |
17376000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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